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E-photosynthesis: Web-based platform for modeling of complex photosynthetic processes

Basic information
Original title:E-photosynthesis: Web-based platform for modeling of complex photosynthetic processes
Authors:David Šafránek, Jan Červený, Matej Klement, Jana Pospíšilová, Luboš Brim, Dušan Lazár, Ladislav Nedbal
Further information
Citation:ŠAFRÁNEK, David, Jan ČERVENÝ, Matej KLEMENT, Jana POSPÍŠILOVÁ, Luboš BRIM, Dušan LAZÁR a Ladislav NEDBAL. E-photosynthesis: Web-based platform for modeling of complex photosynthetic processes. BioSystems, Elsevier, 2011, roč. 103, č. 2, s. 115-124. ISSN 0303-2647. doi:10.1016/j.biosystems.2010.10.013.Export BibTeX
@article{908657,
author = {Šafránek, David and Červený, Jan and Klement, Matej and Pospíšilová, Jana and Brim, Luboš and Lazár, Dušan and Nedbal, Ladislav},
article_number = {2},
doi = {http://dx.doi.org/10.1016/j.biosystems.2010.10.013},
keywords = {Biomodels repository; Computational models; Photosynthesis; Systems biology; Web platform},
language = {eng},
issn = {0303-2647},
journal = {BioSystems},
title = {E-photosynthesis: Web-based platform for modeling of complex photosynthetic processes},
url = {http://www.sciencedirect.com/science/article/pii/S030326471000198X},
volume = {103},
year = {2011}
}
Original language:English
Field:Informatics
WWW:link to a new windowhttp://www.sciencedirect.com/science/article/pii/S030326471000198X
Type:Article in Periodical
Keywords:Biomodels repository; Computational models; Photosynthesis; Systems biology; Web platform

E-photosynthesis framework is a web-based platform for modeling and analysis of photosynthetic processes. Compared to its earlier version, the present platform employs advanced software methods and technologies to support an effective implementation of vastly diverse kinetic models of photosynthesis. We report on the first phase implementation of the tool new version and demonstrate the functionalities of model visualization, presentation of model components, rate constants, initial conditions and of model annotation. The demonstration also includes export of a model to the Systems Biology Markup Language format and remote numerical simulation of the model.

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