RNDr. David Svoboda, Ph.D.
KARAS, Pavel - SVOBODA, David.
Algorithms for Efficient Computation of Convolution. In Design and Architectures for Digital Signal Processing. Vyd. 1st ed. Rijeka (CRO) : InTech, 2013. Neuveden, ISBN 978-953-51-0874-0, pp. 179-208.
SVOBODA, David - MATYSKA, Luděk - ULMAN, Vladimír.
CytoPacq v2.0. 2013.
MAJTNER, Tomáš - SVOBODA, David.
Extension of Tamura Texture Features for 3D Fluorescence Microscopy. In 2012 Second Joint 3DIM/3DPVT Conference: 3D Imaging, Modeling, Processing, Visualization & Transmission. Los Alamitos, CA, USA : IEEE Computer Society, 2012. ISBN 978-0-7695-4873-9, pp. 301-307. 2012, Zurich, Switzerland.
SVOBODA, David - ULMAN, Vladimír.
Generation of Synthetic Image Datasets for Time-Lapse Fluorescence Microscopy. In Proceedings of 9th International Conference on Image Analysis and Recognition. Vyd. LNCS 7325, Part II. Heidelberg : Springer-Verlag, 2012. ISBN 978-3-642-31297-7, pp. 473-482. 25.6.2012, Aveiro, Portugal.
KARAS, Pavel - SVOBODA, David - ZEMČÍK, Pavel.
GPU Optimization of Convolution for Large 3-D Real Images. In Proceedings of the International Conference on Advanced Concepts for Intelligent Vision Systems (ACIVS’12). Neuveden : Springer Berlin / Heidelberg, 2012. ISBN 978-3-642-33139-8, pp. 59-71. 2012, Brno.
STOKLASA, Roman - MAJTNER, Tomáš - SVOBODA, David - BATKO, Michal.
HEp-2 Cells Classifier. 2012.
KARAS, Pavel - SVOBODA, David.
Convolution of Large 3D Images on GPU and its Decomposition. EURASIP Journal on Advances in Signal Processing, NEW YORK (USA), HINDAWI PUBLISHING CORPORATION, USA. ISSN 1687-6172, 2011, vol. 2011, no. 120, pp. 1-12.
SVOBODA, David.
Efficient Computation of Convolution of Huge Images. In Image Analysys and Processing - ICIAP 2011. Vyd. LNCS 6978, Part I. Berlin, Heidelberg : Springer-Verlag, 2011. ISBN 978-3-642-24084-3, pp. 453-462. 13.9.2011, Ravenna, Italy.
SVOBODA, David - HOMOLA, Ondřej - STEJSKAL, Stanislav.
Generation of 3D Digital Phantoms of Colon Tissue. In Proceedings of 8th International Conference on Image Analysis and Recognition. Vyd. LNCS 6754, Part II. Berlin, Heidelberg : Springer-Verlag, 2011. ISBN 978-3-642-21595-7, pp. 31-39. 22.6.2011, Burnaby, BC, Canada.
ULMAN, Vladimír - SVOBODA, David.
Tool for Generation of Synthetic Image Datasets for Time-Lapse Fluorescence Microscopy. 2011.
WILLIAMS, Ian - SVOBODA, David - BOWRING, Nicholas.
A Novel Performance Metric For Grey-Scale Edge Detection. In Proceedings of the International Conference on Computer Vision Theory and Applications. Vyd. Vol. 1. Portugal : Institute for Systems and Technologies of Information, Control and Communication, 2010. ISBN 978-989-674-028-3, pp. 91-97. 17.5.2010, Angers, France.
KOZUBEK, Michal - SVOBODA, David - STEJSKAL, Stanislav.
CytoPacq: A web-based toolbox for simulation of 3D cell imaging and quality control of related image analysis. 2010. Československá mikroskopická společnost.
SVOBODA, David - KOZUBEK, Michal - COUFAL, Jaromír.
CytoPacq. 2009.
SVOBODA, David - KOZUBEK, Michal - STEJSKAL, Stanislav.
Generation of Digital Phantoms of Cell Nuclei and Simulation of Image Formation in 3D Image Cytometry. Cytometry Part A, John Wiley & Sons, Inc., USA. ISSN 1552-4922, 2009, vol. 75A, no. 6, pp. 494-509.
SVOBODA, David - KOZUBEK, Michal - STEJSKAL, Stanislav.
Towards Proper Evaluation of Image Analysis Methods Used in Biomedical Research. 2009. ISBN 978-80-254-2561-5.
SVOBODA, David - MAŠKA, Martin - SKALICKÝ, Jan - KOZUBEK, Michal - STEJSKAL, Stanislav.
3D AcquiGen 0.2. 2008.
SVOBODA, David - MAŠKA, Martin - SKALICKÝ, Jan - KOZUBEK, Michal - STEJSKAL, Stanislav.
3D CytoGen 0.2. 2008.
SVOBODA, David - MAŠKA, Martin - SKALICKÝ, Jan - KOZUBEK, Michal - STEJSKAL, Stanislav.
3D OptiGen 0.2. 2008.
KOZUBEK, Michal - SVOBODA, David - KAŠÍK, Marek - MAŠKA, Martin - HUBENÝ, Jan - STEJSKAL, Stanislav - SEEMAN, Michal - ZEMČÍK, Pavel.
Simulation of fluorescence image formation in 3D image cytometry. 2008.
KOZUBEK, Michal - SVOBODA, David - KAŠÍK, Marek - MAŠKA, Martin - HUBENÝ, Jan - STEJSKAL, Stanislav - SEEMAN, Michal - ZEMČÍK, Pavel.
Simulation of fluorescence image formation in 3D light microscopy. 2008.
WILLIAMS, Ian - SVOBODA, David - BOWRING, Nicholas - GUEST, Elizabeth.
Statistical Edge Detection of Concealed Weapons Using Artificial Neural Networks. In Proceedings of SPIE-IS&T Electronic Imaging. Vyd. Vol. 6812. Bellingham, Washington : SPIE, 2008. ISBN 978-0-8194-6984-7, pp. 68121J-1-12. 2008, San Jose, CA, USA.
SVOBODA, David - MAŠKA, Martin - KAŠÍK, Marek - HUBENÝ, Jan - KOZUBEK, Michal - ZIMMERMANN, Michal - STEJSKAL, Stanislav.
3D AcquiGen 0.1. 2007.
SVOBODA, David - MAŠKA, Martin - KAŠÍK, Marek - HUBENÝ, Jan - KOZUBEK, Michal - ZIMMERMANN, Michal - STEJSKAL, Stanislav.
3D CytoGen 0.1. 2007.
SVOBODA, David - MAŠKA, Martin - KAŠÍK, Marek - HUBENÝ, Jan - KOZUBEK, Michal - ZIMMERMANN, Michal - STEJSKAL, Stanislav.
3D OptiGen 0.1. 2007.
MAŠKA, Martin - HUBENÝ, Jan - SVOBODA, David - KOZUBEK, Michal.
A Comparison of Fast Level Set-Like Algorithms for Image Segmentation in Fluorescence Microscopy. In 3rd International Symposium on Visual Computing. Berlin, Heidelberg : Spinger-Verlag, 2007. ISBN 978-3-540-76855-5, pp. 571-581. 26.11.2007, Lake Tahoe, Nevada/California. LNCS 4842.
SKALNÍKOVÁ, Magdalena - BÁRTOVÁ, Eva - ULMAN, Vladimír - MATULA, Petr - SVOBODA, David - HARNIČAROVÁ, Andrea - KOZUBEK, Michal - KOZUBEK, Stanislav.
Distinct patterns of histone methylation and acetylation in human interphase nuclei. Physiological Research, Prague, Czech Academy of Sciences. ISSN 0862-8408, 2007, vol. 56, no. 6, pp. 797-806.
SVOBODA, David - KAŠÍK, Marek - MAŠKA, Martin - HUBENÝ, Jan - STEJSKAL, Stanislav - ZIMMERMANN, Michal.
On Simulating 3D Fluorescent Microscope Images. In Computer Analysis of Images and Patterns. Berlin, Heidelberg : Springer-Verlag, 2007. ISBN 978-3-540-74271-5, pp. 309-316. 2007, Vienna. LNCS 4673.
WILLIAMS, Ian - SVOBODA, David - BOWRING, Nicholas - GUEST, Elizabeth.
Improved statistical edge detection through neural networks. In 10th Conference on Medical Image Understanding and Analysis. Manchester : BMVA, 2006. ISBN 1-901727-31-9, pp. 56-60. 2006, University of Manchester.
SVOBODA, David - WILLIAMS, Ian - BOWRING, Nicholas - GUEST, Elizabeth.
Statistical techniques for edge detection in histological images. In First International Conference on Computer Vision Theory and Applications. Portugalsko : INSTICC Press, 2006. ISBN 972-8865-40-6, pp. 457-462. 2006, Setúbal, Portugalsko.
KOZUBEK, Michal - MATULA, Pavel - MATULA, Petr - SVOBODA, David.
Analysis of biomedical image data acquired using optical microscopy. In Prague Post Genome Technology Workshop. Prague, Czech Republic : Czech Pattern Recognition Society, 2005. ISBN 80-01-03239-6, pp. 24-27. 6.6.2005, Praha.
KOZUBEK, Michal - MATULA, Pavel - MATULA, Petr - SVOBODA, David.
Analysis of biomedical image data acquired using optical microscopy. In Dušek, Ladislav - Hřebíček, Jiří - Jarkovský, Jiří. Proceedings of the 1st International Summer School on Computational Biology. Brno : Masaryk University, 2005. ISBN 80-210-3907-8, pp. 21-28. 4.9.2005, Brno.
KOZUBEK, Michal - MATULA, Pavel - MATULA, Petr - SVOBODA, David.
Analysis of biomedical image data acquired using optical microscopy. 2005. Brno, Invited talk.
JANSOVÁ, Eva - KRONTORÁD, Petr - KOUTNÁ, Irena - STEJSKAL, Stanislav - MATULA, Petr - SVOBODA, David - KOZUBEK, Michal - KOZUBEK, Stanislav.
Combination of cDNA microarray technology and fluorescence leads to better understanding of relationships between gene expression and epigenetic regulation. 2005.
HUBENÝ, Jan - SVOBODA, David - MATULA, Pavel - KOZUBEK, Michal.
Využití deformabilních modelů v obrazové cytometrii. 2005.
KOZUBEK, Michal - MATULA, Petr - MATULA, Pavel - SVOBODA, David - HUBENÝ, Jan - KRONTORÁD, Petr.
Automated image analysis in fluorescence microscopy: From isolated cells to tissues and microarray images. In Biophysics of the Genome. Vyd. First Edition 2004. Brno : Masaryk University, 2004. ISBN 80-210-3560-9, pp. 44-46. 12.10.2004, Brno.
SVOBODA, David.
Towards a Fully Automated Tissue Cell Segmentation Method. In Visualization, Imaging, and Image Processing. Anaheim, Calgary, Zurich : ACTA Press, 2004. ISBN 0-88986-454-3, pp. 430-434. September 6-8, 2004, Marbella, Spain.
MATULA, Pavel - SVOBODA, David.
3D Object reconstructions in image cytometry. In Biophysics of the Genome. Brno : Masaryk University, 2003. ISBN 80-210-3226-X, pp. 49-50. 2003, Hlohovec, Czech Republic.
SVOBODA, David - MATULA, Pavel.
Multilevel Adaptive Thresholding and Dual Simplex Mesh Deformation as a Tool for Tissue Reconstruction. In Visualization, Imaging, and Image Processing. Anaheim, Calgary, Zurich : ACTA Press, 2003. ISBN 0-88986-382-2, pp. 499-503. September 8-10, 2003, Benalmádena, Spain.
MATULA, Pavel - SVOBODA, David.
Spherical Object Reconstruction Using Simplex Meshes from Sparse Data. In Discrete Geometry for Computer Imagery. Berlin Heidelberg New York : Springer-Verlag, 2003. ISBN 3-540-20499-7, pp. 524-533. 19.11.2003, Naples. LNCS 2886.
SVOBODA, David - MATULA, Pavel.
Tissue image reconstruction: Localization of nuclei markers and segmentation based on deformable models. In Biophysics of the Genome. Brno : Masaryk University, 2003. ISBN 80-210-3226-X, pp. 67-70. 2003, Hlohovec, Czech Republic.
SVOBODA, David - MATULA, Pavel.
Tissue Reconstruction Based on Deformation of Dual Simplex Meshes. In Discrete Geometry for Computer Imagery. Berlin, Heidelberg, New York : Springer, 2003. ISBN 3-540-20499-7, pp. 514-523. Naples, Italy, November 2003. LNCS 2886.
MATULA, Pavel - SVOBODA, David.
Cell Nuclei Segmentation Using Star-Shaped Simplex Meshes. In Biophysics of the Genome and Its Interactions. Brno : Masaryk University, 2002. ISBN 80-210-2853-X, pp. 74-76. 2001, October 15-17, 2001, Hlohovec, Czech Republic.
MATULA, Pavel - SVOBODA, David.
Spherical Object Reconstruction Using Star-Shaped Simplex Meshes. In Energy Minimization Methods in Computer Vision and Pattern Recognition. Berlin, Heidelberg, New York : Springer-Verlag, 2001. ISBN 3-540-42523-3, pp. 608-620. September 3-5, 2001, Sophia Antipolis, France. LNCS 2134.
SVOBODA, David.
Využití deformabilních modelů při analýze biomedicínských dat. Brno : 2001. iv, 42 pp.
