Research Project Results

 

Determination of markers, screening and early diagnostics of cancer diseases using highly automated processing of multidimensional biomedical images (Biomarker)

Project Identification:2B06052
MU Investigator:Prof. RNDr. Michal Kozubek, Ph.D.
MU Faculty/Unit:Faculty of Informatics
Project Period:7/2006 - 6/2011
Investor/Programme:Ministry of Education, Youth and Sports of the CR -
Cooperating Organization:
link to a new windowBrno University of Technology
link to a new windowCAMEA Ltd.
link to a new windowFaculty of Information Technology TU Brno

Results: (Czech only)

Cílem projektu je vyvinout nové postupy zpracování obrazových dat z fluorescenční mikroskopie a microarrays, které v kombinaci s výzkumem genomických a proteomických technik pomohou s vytipováním markerů, screeningu a diagnostice nádorových onemocnění.


Publications:

First pagePrevious page|1|2|3|4|5|Next pageLast page
found: 121 records, displayed 1 - 30

 
2012

VAŘECHA, Miroslav - POTĚŠILOVÁ, Michaela - MATULA, Pavel - KOZUBEK, Michal.
Endonuclease G interacts with histone H2B and DNA topoisomerase II alpha during apoptosis. Mol Cell Biochem, The Nederlands. ISSN 0300-8177, 2012, vol. 363, no. 1-2, pp. 301-307.


more

 

KARAS, Pavel - SVOBODA, David - ZEMČÍK, Pavel.
GPU Optimization of Convolution for Large 3-D Real Images. In Proceedings of the International Conference on Advanced Concepts for Intelligent Vision Systems (ACIVS’12). Neuveden : Springer Berlin / Heidelberg, 2012. ISBN 978-3-642-33139-8, pp. 59-71. 2012, Brno.


more

 

LISAUSKAS, Tautvydas - MATULA, Petr - CLAAS, Christoph - REUSING, Susanne - WIEMANN, Stefan - ERFLE, Holger - LEHMANN, Lars - FISCHER, Peter - EILS, Roland - ROHR, Karl - STORRIE, Brian - STARKUVIENE, Vytaute.
Live cell assays to identify regulators of ER to Golgi trafficking. Traffic, John Wiley & Sons, USA. ISSN 1398-9219, 2012, vol. 13, no. 3, 416–432-17 pp.


more

 

DANĚK, Ondřej - MATULA, Pavel - MAŠKA, Martin - KOZUBEK, Michal.
Smooth Chan-Vese Segmentation via Graph Cuts. Pattern Recognition Letters, Amsterdam, Elsevier, The Nederlands. ISSN 0167-8655, 2012, vol. 33, no. 10, pp. 1405-1410.


more

 
2011

DANĚK, Ondřej - MAŠKA, Martin.
A Simple Topology Preserving Max-Flow Algorithm for Graph Cut Based Image Segmentation. In Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science (Selected Papers). Saarbrücken, Warden : Schloss Dagstuhl Publishing, 2011. ISBN 978-3-939897-22-4, pp. 19-25. 22.10.2010, Mikulov. OASIcs: Open Access Series in Informatics.


more

 

DANĚK, Ondřej - MATULA, Pavel.
An Improved Riemannian Metric Approximation for Graph Cuts. In 16th International Conference on Discrete Geometry for Computer Imagery. Berlin, Heidelberg : Springer-Verlag, 2011. ISBN 978-3-642-19866-3, pp. 71-82. 2011, Nancy. LNCS 6607.


more

 

ULMAN, Vladimír.
Boundary Treatment for Young-van Vliet Recursive Zero-Mean Gabor Filtering. EURASIP Journal on Advances in Signal Processing, NEW YORK (USA), HINDAWI PUBLISHING CORPORATION, USA. ISSN 1687-6172, 2011, vol. 2011, no. ID 234090, pp. 1-9.


more

 

KARAS, Pavel - SVOBODA, David.
Convolution of Large 3D Images on GPU and its Decomposition. EURASIP Journal on Advances in Signal Processing, NEW YORK (USA), HINDAWI PUBLISHING CORPORATION, USA. ISSN 1687-6172, 2011, vol. 2011, no. 120, pp. 1-12.


more

 

SVOBODA, David.
Efficient Computation of Convolution of Huge Images. In Image Analysys and Processing - ICIAP 2011. Vyd. LNCS 6978, Part I. Berlin, Heidelberg : Springer-Verlag, 2011. ISBN 978-3-642-24084-3, pp. 453-462. 13.9.2011, Ravenna, Italy.


more

 

KARAS, Pavel.
Efficient Computation of Morphological Greyscale Reconstruction. In Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science (Selected Papers). Saarbrücken, Warden : Schloss Dagstuhl Publishing, 2011. ISBN 978-3-939897-22-4, pp. 54-61. 22.10.2010, Mikulov.


more

 

VAŘECHA, Miroslav - POTĚŠILOVÁ, Michaela - MATULA, Pavel - KOZUBEK, Michal.
Endonuclease G interacts with histone H2B, AIF, and DNA topoisomerase II alpha during apoptosis as revealed by FRET analysis of living cells. 2011.


more

 

ULMAN, Vladimír.
Fast Anisotropic Filtering and Performance Evaluation Tool for Optical Flow in Biomedical Image Analysis. Brno : Masarykova Univerzita, 2011. 210 pp.


more

 

MAŠKA, Martin - MATULA, Pavel - MUNOZ-BARRUTIA, Arrate - ORTIZ-DE-SOLÓRZANO, Carlos.
Fast Tracking Algorithm of GFP-Transfected Living Cells Based on the Chan-Vese Model. 2011.


more

 

SVOBODA, David - HOMOLA, Ondřej - STEJSKAL, Stanislav.
Generation of 3D Digital Phantoms of Colon Tissue. In Proceedings of 8th International Conference on Image Analysis and Recognition. Vyd. LNCS 6754, Part II. Berlin, Heidelberg : Springer-Verlag, 2011. ISBN 978-3-642-21595-7, pp. 31-39. 22.6.2011, Burnaby, BC, Canada.


more

 

HOLUBCOVÁ, Zuzana - MATULA, Pavel - SEDLÁČKOVÁ, Miroslava - VINARSKÝ, Vladimír - DOLEŽALOVÁ, Dáša - BÁRTA, Tomáš - DVOŘÁK, Petr - HAMPL, Aleš.
Human embryonic stem cells suffer from centrosomal amplification. Stem Cells, USA. ISSN 1066-5099, 2011, vol. 29, no. 1, pp. 46-56.


more

 

BRÁZDILOVÁ, Silvie Luisa - KOZUBEK, Michal.
Image Division Technique in Pre-acquisition Analysis of Information Content for Automated Microscopy. Journal of Microscopy, Oxford, Blackwell Science, Great Britain. ISSN 0022-2720, 2011, vol. 242, no. 3, pp. 279-289.


more

 

VAŘECHA, Miroslav - POTĚŠILOVÁ, Michaela - MATULA, Pavel - KOZUBEK, Michal.
Interaction of endonuclease G with histone H2B, AIF, and DNA topoisomerase II alpha during apoptosis as revealed by FRET imaging of living cells. 2011. ISBN 978-80-260-0676-3.


more

 

STAIER, Florian - EIPEL, Heinz - MATULA, Petr - EVSIKOV, Alexei V - KOZUBEK, Michal - CREMER, Christoph - HAUSMANN, Michael.
Micro axial tomography: A miniaturized, versatile stage device to overcome resolution anisotropy in fluorescence light microscopy. Rev. Sci. Instrum., USA, American Institute of Physica, USA. ISSN 0034-6748, 2011, vol. 82, no. 9, pp. "093701-1"-"093701-8".


more

 

TESAŘOVÁ, Lenka - KRONTORÁD KOUTNÁ, Irena - KOŘÍSTEK, Zdeněk - KLABUSAY, Martin.
Multiple myeloma patients at peripheral blood stem cell harvest: restricted usage of TCR beta variable families. Clinical Immunology, Elsevier, USA. ISSN 1521-6616, 2011, vol. 138, no. 1, pp. 67-76.


more

 

KNAPP, Bettina - REBHAN, Ilka - KUMAR, Anil - MATULA, Petr - KIANI, Narsis A - BINDER, Marco - ERFLE, Hoger - ROHR, Karl - EILS, Roland - BARTENSCHLAGER, Ralf - KADERALI, Lars.
Normalizing for Individual Cell Population Context in the Analysis of High-Content Cellular Screens. BMC Bioinformatics, BioMed Central, Great Britain. ISSN 1471-2105, 2011, vol. 12, no. 485, pp. 1-14.


more

 

DANĚK, Ondřej - MATULA, Pavel.
On Euclidean Metric Approximation via Graph Cuts. In Computer Vision, Imaging and Computer Graphics. Theory and Applications. Berlin, Heidelberg : Springer-Verlag, 2011. ISBN 978-3-642-25381-2, pp. 125-134. 2010, Angers.


more

 

KRONTORÁD KOUTNÁ, Irena - PETERKOVÁ, Martina - ŠIMARA, Pavel - STEJSKAL, Stanislav - TESAŘOVÁ, Lenka - KOZUBEK, Michal.
Proliferation and differentiation potential of CD133+ and CD34+ populations from the bone marrow and mobilized peripheral blood. Annals of hematology, Germany, Springer, Germany. ISSN 0939-5555, 2011, vol. 90, no. (2), pp. 127-137.


more

 

MATULA, Petr - LISAUSKAS, Tautvydas - STARKUVIENE, Vytaute - ROHR, Karl.
Quantification of Golgi Complex Assembly and Disassembly in LiveCell Fluorescence Microscopy Images. In Proceedings of Workshop on Microscopic Image Analysis with Applications in Biology. Neuveden : Neuveden, 2011. 4 pp. 2.9.2011, Heidelberg.


more

 

REISS, S. - REBHAN, Ilka - BACKES, P. - ROMERO-BREY, I. - ERFLE, Holger - MATULA, Petr - KADERALI, Lars - POENISCH, Marion - BLANKENBURG, H. - HIET, M.S. - LONGERICH, T. - DIEHL, S. - RAMIREZ, F. - BALLA, T. - ROHR, Karl - KAUL, A. - BÜHLER, S. - PEPPERKOK, Rainer - LENGAUER, T. - ALBRECHT, M. - EILS, Roland - SCHIRMACHER, P. - LOHMANN, V. - BARTENSCHLAGER, Ralf.
Recruitment and activation of a lipid kinase by hepatitis C virus NS5A is essential for integrity of the membranous replication compartment. Cell Host & Microbe, USA. ISSN 1931-3128, 2011, vol. 9, no. 1, pp. 32-45.


more

 

MAŠKA, Martin - MATULA, Pavel - KOZUBEK, Michal.
Simultaneous Tracking of Multiple Objects Using Fast Level Set-Like Algorithm. In Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science (Selected Papers). Saarbrücken, Wadern : Schloss Dagstuhl Publishing, 2011. ISBN 978-3-939897-22-4, pp. 69-76. 22.10.2010, Mikulov.


more

 

PELLICANO, Francesca - ŠIMARA, Pavel - SINCLAIR, Amy - HELGASON, Gudmundur Vignir - COPLAND, Mhairi - GRANT, Steven - HOLYOAKE, Tessa.
The MEK inhibitor PD184352 enhances BMS-214662-induced apoptosis in CD34+ CML stem/progenitor cells. Leukemia, London, Nature Publishing Group, Great Britain. ISSN 0887-6924, 2011, vol. 25, no. 7, pp. 1159-1167.


more

 

ULMAN, Vladimír - SVOBODA, David.
Tool for Generation of Synthetic Image Datasets for Time-Lapse Fluorescence Microscopy. 2011.


more

 
2010

MAŠKA, Martin - MATULA, Pavel - DANĚK, Ondřej - KOZUBEK, Michal.
A Fast Level Set-Like Algorithm for Region-Based Active Contours. In 6th International Symposium on Visual Computing. Berlin, Heidelberg : Springer-Verlag, 2010. ISBN 978-3-642-17276-2, pp. 387-396. 27.11.2010, Las Vegas. LNCS 6455.


more

 

book coverSTEJSKAL, Stanislav - MATULA, Pavel - DANĚK, Ondřej - MAŠKA, Martin - KRONTORÁD KOUTNÁ, Irena - KOZUBEK, Michal.
A novel approach to evaluation of the spatial relationship of fluorescent signals in ImunnoFISH analysis of different kind. In Advances in Molecular and Cancer Biology, 2010. Brno : muni PRESS, 2010. ISBN 978-80-210-5312-0, pp. 39-41. 11.11.2010, Brno, Česká Republika.


more

 

DANĚK, Ondřej - MAŠKA, Martin.
A Simple Topology Preserving Max-Flow Algorithm for Graph Cut Based Image Segmentation. In 6th Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. Brno : NOVPRESS, 2010. ISBN 978-80-87342-10-7, pp. 45-52. 22.10.2010, Mikulov.


more

 
First pagePrevious page|1|2|3|4|5|Next pageLast page
found: 121 records, displayed 1 - 30