Mgr. Martin Prokop, Ph.D.

Personal photo

 

Person Identification
  • Mgr. Martin Prokop, Ph.D.
Workplace
  • CEITEC - Central European Institute of Technology
    Masaryk University
    Kamenice 5, 625 00, Brno, Czech Republic
    and
    National Centre for Biomolecular Research
    Faculty of Science, Masaryk University
    Kotlarska 2, 611 37, Brno, Czech Republic
    Tel.: +420-549 49-6662
    E-mail: martinp@chemi.muni.cz
Employment Position
  • Expert worker (full-time)
Education and Academic Qualifications
  • 2004: Ph.D., Biomolecular Chemistry; National Centre for Biomolecular Research, Faculty of Science, Masaryk University Brno, Czech Republic; Title of thesis: TRITON - software for rational design of proteins.
  • 1997: MSc., Organic Chemistry; Faculty of Science, Masaryk University Brno.
    Diploma work: Triton - visualization software for study of enzymatic reactions.
Employment Summary
  • 2011-now: CEITEC - Central European Institute of Technology, Masaryk University, Brno, Czech Republic, expert worker
  • 2004-now: National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Brno, Czech Republic, expert worker
  • 2000-2004: National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Brno, Czech Republic, expert worker (part-time)
  • 1997-2000: Laboratory of Structure and Dynamics of Biomolecules, Faculty of Science, Masaryk University, Brno, Czech Republic, expert worker (part-time)
Scientific and Research Activities
  • Development of software for molecular modelling, modelling of enzymatic reactions.
Appreciation of Science Community
  • 2004: Award of Rector of Masaryk University
Selected Publications
  • PROKOP, Martin, Jan ADAM, Zdeněk KŘÍŽ, Michaela WIMMEROVÁ a Jaroslav KOČA. TRITON: a graphical tool for ligand-binding protein engineering. Bioinformatics, Oxford University Press, 2008, roč. 24, č. 17, s. 1955-1956. ISSN 1367-4803. Web page of the program TRITONAbstract and full text (open access artcle)info
  • ADAM, Jan, Zdeněk KŘÍŽ, Martin PROKOP, Michaela WIMMEROVÁ a Jaroslav KOČA. In silico mutagenesis and docking studies of Pseudomonas aeruginosa lectin PA-IIL - predicting binding modes and energies. Journal of Chemical Information and Modeling, 2008, roč. 48, č. 11, s. 2234-2242. ISSN 1549-9596. info
  • PROKOP, Martin, Jan ADAM, Zdeněk KŘÍŽ, Michaela WIMMEROVÁ a Jaroslav KOČA. TRITON: Graphic software for docking ligands to protein mutants. In Modeling Interactions in Biomolecules III, book of abstracts. Prague: Neuveden, 2007. s. 44. URLinfo
  • PROKOP, Martin, Jiří DAMBORSKÝ a Jaroslav KOČA. TRITON: graphic software for modelling protein mutants and calculation reaction pathways. In Materials Structure in Chemistry, Biology, Physics and Technology. vol.12, no. 1. Praha: Czech and Slovak Crystallographic Association, 2005. s. 17. ISSN 1211-5894. info
  • BOHÁČ, Michal, Yuji NAGATA, Zbyněk PROKOP, Martin PROKOP, Marta MONINCOVÁ, Masataka TSUDA, Jaroslav KOČA a Jiri DAMBORSKÝ. Halide-stabilizing residues of haloalkane dehalogenases studied by quantum mechanic calculations and site-directed mutagenesis. Biochemistry, 2002, roč. 41, č. 48, s. 14272-14280. ISSN 0006-2960. URLinfo
  • DAMBORSKÝ, Jiří, Martin PROKOP a Jaroslav KOČA. TRITON: graphic software for rational engineering of enzymes. Trends in Biochemical Sciences, 2001, roč. 28, č. 1, s. 71-73. URLinfo
  • PROKOP, Martin, Jiří DAMBORSKÝ a Jaroslav KOČA. TRITON: in silico construction of protein mutants and prediction of their activities. Bioinformatics, 2000, roč. 16, č. 9, s. 845-846. ISSN 1367-4803. URLinfo
  • DAMBORSKÝ, Jiří, Michal BOHÁČ, Martin PROKOP a Jaroslav KOČA. Computational site-directed mutagenesis of haloalkane dehalogenase in position 172. Protein Engineering, 1998, roč. 11, č. 10, s. 901-907. URLinfo
  • KUTÝ, Michal, Jiří DAMBORSKÝ, Martin PROKOP a Jaroslav KOČA. A molecular modelling study of the catalytic mechanism of haloalkane dehalogenase: 2. Quantum chemical study of complete reaction mechanism. Journal of Chemical Information and Computer Sciences, 1998, roč. 38, č. 4, s. 736-741. ISSN 0095-2338. URLinfo

Last update: 2011/09/05