Jaroslav Koča Research Group

Articles

• Community curation of bioinformatics software and data resources

  ISON Jon MÉNAGER Hervé BRYAN Brancotte JAANISO Erik SALUMETS Ahto RAČEK Tomáš LAMPRECHT Anna-Lena PALMBLAD Magnus KALAŠ Matúš CHMURA Piotr HANCOCK John M SCHWÄMMLE Veit IENASESCU Hans-Ioan

  Article in Periodical

  Briefings in Bioinformatics, year: 2019, DOI

• Protein Data Bank: the single global archive for 3D macromolecular structure data

  BURLEY S.K. BERMAN H.M. BHIKADIYA C. BI C.X. CHEN L. DI COSTANZO L. CHRISTIE C. DUARTE J.M. DUTTA S. FENG Z.K. GHOSH S. GOODSELL D.S. GREEN R.K. GURANOVIC V. GUZENKO D. HUDSON B.P. LIANG Y.H. LOWE R. PEISACH E. PERISKOVA I. RANDLE C. ROSE A. SEKHARAN M. SHAO CH. TAO Y.P. VALASATAVA Y. VOIGT M. WESTBROOK J. YOUNG J. ZARDECKI C. ZHURAVLEVA M. KURISU G. NAKAMURA H. KENGAKU Y. CHO H. SATO J. KIM J.Y. IKEGAWA Y. NAKAGAWA A. YAMASHITA R. KUDOU T. BEKKER G.J. SUZUKI H. IWATA T. YOKOCHI M. KOBAYASHI N. FUJIWARA T. VELANKAR S. KLEYWEGT G.J. ANYANGO S. ARMSTRONG D.R. BERRISFORD J.M. CONROY M.J. DANA J.M. DESHPANDE M. GANE P. GÁBOROVÁ Romana GUPTA D. GUTMANAS A. KOČA Jaroslav MAK L. MIR S. MUKHOPADHYAY A. NADZIRIN N. NAIR S. PATWARDHAN A. PAYSAN-LAFOSSE T. PRAVDA Lukáš SALIH O. SEHNAL David VARADI M. SVOBODOVÁ VAŘEKOVÁ Radka MARKLEY J.L. HOCH J.C. ROMERO P.R. BASKARAN K. MAZIUK D. ULRICH E.L. WEDELL J.R. YAO H.Y. LIVNY M. IOANNIDIS Y.E.

  Article in Periodical

  Nucleic Acids Research, year: 2019, volume: 47, edition: D1, DOI

• The bio.tools registry of software tools and data resources for the life sciences

  ISON Jon IENASESCU Hans CHMURA Piotr RYDZA Emil MÉNAGER Hervé KALAŠ Matúš SCHWÄMMLE Veit GRÜNING Björn BEARD Niall LOPEZ Rodrigo DUVAUD Severine STOCKINGER Heinz PERSSON Bengt SVOBODOVÁ VAŘEKOVÁ Radka RAČEK Tomáš VONDRÁŠEK Jiří PETERSON Hedi SALUMETS Ahto JONASSEN Inge HOOFT Rob NYRÖNEN Tommi VALENCIA Alfonso CAPELLA Salvador GELPÍ Josep ZAMBELLI Federico SAVAKIS Babis LESKOŠEK Brane RAPACKI Kristoffer BLANCHET Christophe JIMENEZ Rafael OLIVEIRA Arlindo VRIEND Gert COLLIN Olivier HELDEN Jacques van LONGREEN Peter BRUNAK Soren

  Article in Periodical

  GENOME BIOLOGY, year: 2019, volume: 20, edition: 164, DOI

• ValTrendsDB: bringing Protein Data Bank validation information closer to the user

  HORSKÝ Vladimír BENDOVÁ Veronika TOUŠEK Dominik KOČA Jaroslav SVOBODOVÁ VAŘEKOVÁ Radka

  Article in Periodical

  Bioinformatics, year: 2019, volume: 2019, edition: 2.7.2019, DOI

Chapters

• Automated family-wide annotation of secondary structure elements

  MIDLIK Adam HUTAŘOVÁ VAŘEKOVÁ Ivana HUTAŘ Jan MOTURU Tarakaramji NAVRÁTILOVÁ Veronika KOČA Jaroslav BERKA Karel SVOBODOVÁ VAŘEKOVÁ Radka

  Chapter of a book

  Protein supersecondary structures: Methods and protocols, edition: Vyd. Second Edition, year: 2019, number of pages: 25 s.

Other applied results

• ValTrendsDB: Database of biomacromolecular structure validation trends

  HORSKÝ Vladimír BENDOVÁ Veronika TOUŠEK Dominik KOČA Jaroslav SVOBODOVÁ VAŘEKOVÁ Radka

  Year: 2019