Analysis and Cooperation

Articles

• A deterministic approach for rapid identification of the critical links in networks

  VODÁK Rostislav BÍL Michal SVOBODA Tomáš KŘIVÁNKOVÁ Zuzana KUBEČEK Jan REBOK Tomáš HLINĚNÝ Petr

  Article in Periodical

  PLOS ONE, year: 2019, volume: 14, edition: 7, DOI

• A GPU acceleration of 3-D Fourier reconstruction in cryo-EM

  STŘELÁK David SORZANO Carlos Óscar S. CARAZO José María FILIPOVIČ Jiří

  Article in Periodical

  The International Journal of High Performance Computing Applications, year: 2019, volume: 33, edition: 5, DOI

• Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport

  ŠTOURAČ Jan VÁVRA Ondřej KOKKONEN Piia Pauliina FILIPOVIČ Jiří RANGEL PAMPLONA PIZARRO PINTO José Gaspar BREZOVSKÝ Jan DAMBORSKÝ Jiří BEDNÁŘ David

  Article in Periodical

  Nucleic acids research, year: 2019, volume: 47, edition: W1, DOI

• CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels

  VÁVRA Ondřej FILIPOVIČ Jiří PLHÁK Jan BEDNÁŘ David MARQUES Sérgio Manuel BREZOVSKÝ Jan ŠTOURAČ Jan MATYSKA Luděk DAMBORSKÝ Jiří

  Article in Periodical

  Bioinformatics, year: 2019, DOI

• Multi-phase ELAStic Aggregates (MELASA) software tool for modeling anisotropic elastic properties of lamellar composites

  FRIÁK Martin LAGO Dušan KOUTNÁ Nikola HOLEC David REBOK Tomáš ŠOB Mojmír

  Article in Periodical

  Computer Physics Communications, year: 2019

• West-Life: A Virtual Research Environment for structural biology

  MORRIS Chris ANDREETTO Paolo BANCI Lucia BONVIN Alexandre M J J CHOJNOWSKI Grzegorz CANO Laura del CARAZO José Maria CONESA Pablo DAENKE Susan DAMASKOS George GIACHETTI Andrea HALEY Natalie E C HEKKELMAN Maarten L HEUSER Philipp JOOSTEN Robbie P KOUŘIL Daniel KŘENEK Aleš KULHÁNEK Tomáš LAMZIN Victor S NADZIRIN Nurul PERRAKIS Anastassis ROSATO Antonio SANDERSON Fiona SEGURA Joan SCHAARSCHMIDT Joerg SOBOLEV Egor TRALDI Sergio TRELLET Mikael E VELANKAR Sameer VERLATO Marco WINN Martyn

  Article in Periodical

  Journal of Structural Biology: X, year: 2019, DOI

Conference proceedings

• Exploiting historical data: pruning autotuning spaces and estimating the number of tuning steps

  OĽHA Jaroslav HOZZOVÁ Jana FOUSEK Jan FILIPOVIČ Jiří

  Article in Proceedings

  Seventeenth International Workshop Algorithms, Models and Tools for Parallel Computing on Heterogeneous Platforms, year: 2019