RNDr. David Sehnal, Ph.D.

2025

• MolViewSpec: a Mol* extension for describing and sharing molecular visualizations

  MIDLIK Adam BITTRICH Sebastian FLEMING Jennifer R NAIR Sreenath VELANKAR Sameer BURLEY Stephen K YOUNG Jasmine Y VALLAT Brinda SEHNAL David

  Article in Periodical

  Nucleic Acids Research, year: 2025, volume: 53, edition: W1, DOI

• Refining Structure-Based Search in AlphaFold DB: Including confidence metrics into AlphaFind

  SLANINÁKOVÁ Terézia MARŠÁLKOVÁ Eva GREŠOVÁ Katarína KŘENEK Aleš OĽHA Jaroslav PAVLÍK Tomáš ŠPRINGEROVÁ Pavlína SEHNAL David ANTOL Matej

  Conference abstract

  Year: 2025, type: Conference abstract

• Visualizing and analyzing 3D biomolecular structures using Mol* at RCSB.org: Influenza A H5N1 virus proteome case study

  BITTRICH Sebastian ROSE Alexander S SEHNAL David DUARTE Jose M ROSE Yana SEGURA Joan PIEHL Dennis W VALLAT Brinda SHAO Chenghua BHIKADIYA Charmi LIANG Jesse MA Mark GOODSELL David S BURLEY Stephen K DUTTA Shuchismita

  Article in Periodical

  Protein Science, year: 2025, volume: 34, edition: 4, DOI

2024

• Analysis and Visualization of Protein Channels, Tunnels, and Pores with MOLEonline and ChannelsDB 2.0

  ŠPAČKOVÁ Anna BAZGIER Václav RAČEK Tomáš SEHNAL David SVOBODOVÁ Radka BERKA Karel

  Chapter of a book

  Protein Bioinformatics, edition: Vyd. 1, year: 2024, number of pages: 15 s.

• Describing and Sharing Molecular Visualizations Using the MolViewSpec Toolkit

  BITTRICH Sebastian MIDLIK Adam VARADI Mihaly VELANKAR Sameer BURLEY Stephen K YOUNG Jasmine Y SEHNAL David VALLAT Brinda

  Article in Periodical

  Current Protocols, year: 2024, volume: 4, edition: 7, DOI

• ChannelsDB 2.0: a comprehensive database of protein tunnels and pores in AlphaFold era

  ŠPAČKOVÁ Anna VÁVRA Ondřej RAČEK Tomáš BAZGIER Václav SEHNAL David DAMBORSKÝ Jiří SVOBODOVÁ Radka BEDNÁŘ David BERKA Karel

  Article in Periodical

  Nucleic Acids Research, year: 2024, volume: 52, edition: D1, DOI

• Mesoscale explorer: Visual exploration of large-scale molecular models

  ROSE Alexander SEHNAL David GOODSELL David S AUTIN Ludovic

  Article in Periodical

  Protein Science, year: 2024, volume: 33, edition: 10, DOI

• Visualizing Volumetric and Segmentation Data using Mol* Volumes & Segmentations 2.0

  CHARESHNEU Aliaksei CANTARA Alessio TICHY Dominik SEHNAL David

  Article in Periodical

  Current Protocols, year: 2024, volume: 4, edition: 12, DOI

2023

• ChannelsDB 2.0: A Comprehensive Database of Protein Tunnels and Pores in AlphaFold Era

  ŠPAČKOVÁ Anna VÁVRA Ondřej RAČEK Tomáš BAZGIER Václav SEHNAL David DAMBORSKÝ Jiří SVOBODOVÁ Radka BERKA Karel

  Conference abstract

  Year: 2023, type: Conference abstract

• Mol* Volumes and Segmentations: visualization and interpretation of cell imaging data alongside macromolecular structure data and biological annotations

  CHARESHNEU Aliaksei MIDLIK Adam IONESCU Crina-Maria ROSE Alexander HORSKÝ Vladimír CANTARA Alessio SVOBODOVÁ Radka BERKA Karel SEHNAL David

  Article in Periodical

  Nucleic Acids Research, year: 2023, volume: 51, edition: W1, DOI