RNDr. Ivana Hutařová Vařeková, Ph.D.

2025

• MOLEonline: a web-based tool for analysing channels, tunnels and pores (2025 update)

  RAČEK Tomáš VEĽKÝ Dušan BUČEKOVÁ Gabriela SCHINDLER Ondřej HUTAŘOVÁ VAŘEKOVÁ Ivana ŠPAČKOVÁ Anna BAZGIER Václav BERKA Karel SVOBODOVÁ Radka

  Article in Periodical

  Bioinformatics, year: 2025, volume: 41, edition: 9, DOI

2023

• New ways of protein family visualization in AlphaFold era

  SVOBODOVÁ Radka BERKA Karel HUTAŘOVÁ VAŘEKOVÁ Ivana RAČEK Tomáš SCHINDLER Ondřej

  Appeared in Conference without Proceedings

  Year: 2023, type: Appeared in Conference without Proceedings

2022

• OverProt: secondary structure consensus for protein families

  MIDLIK Adam HUTAŘOVÁ VAŘEKOVÁ Ivana HUTAŘ Jan CHARESHNEU Aliaksei BERKA Karel SVOBODOVÁ Radka

  Article in Periodical

  Bioinformatics, year: 2022, volume: 38, edition: 14, DOI

2021

• 2DProts: database of family-wide protein secondary structure diagrams

  HUTAŘOVÁ VAŘEKOVÁ Ivana HUTAŘ Jan MIDLIK Adam HORSKÝ Vladimír HLADKÁ Eva SVOBODOVÁ Radka BERKA Karel

  Article in Periodical

  Bioinformatics, year: 2021, volume: 37, edition: 23, DOI

• CATH: increased structural coverage of functional space

  SILLITOE Ian BORDIN Nicola DAWSON Natalie WAMAN Vaishali P. ASHFORD Paul SCHOLES Harry M. PANG Camilla S.M. WOODRIDGE Laurel RAUER Clemens SEN Neeladri ABBASIAN Mahnaz LE CORNU Sean LAM Su Datt BERKA Karel HUTAŘOVÁ VAŘEKOVÁ Ivana SVOBODOVÁ Radka LEES Jon ORENGO Christine A.

  Article in Periodical

  Nucleic Acids Research, year: 2021, volume: 49, edition: D1, DOI

2019

• Automated family-wide annotation of secondary structure elements

  MIDLIK Adam HUTAŘOVÁ VAŘEKOVÁ Ivana HUTAŘ Jan MOTURU Tarakaramji NAVRÁTILOVÁ Veronika KOČA Jaroslav BERKA Karel SVOBODOVÁ VAŘEKOVÁ Radka

  Chapter of a book

  Protein supersecondary structures: Methods and protocols, edition: Vyd. Second Edition, year: 2019, number of pages: 25 s.

• Creation and visualization of secondary structure consensus for protein families

  MIDLIK Adam HUTAŘOVÁ VAŘEKOVÁ Ivana HUTAŘ Jan NAVRÁTILOVÁ Veronika KOČA Jaroslav BERKA Karel SVOBODOVÁ VAŘEKOVÁ Radka

  Appeared in Conference without Proceedings

  Year: 2019, type: Appeared in Conference without Proceedings

2018

• Annotation of protein secondary structure elements for whole protein families

  MIDLIK Adam HUTAŘOVÁ VAŘEKOVÁ Ivana HUTAŘ Jan NAVRÁTILOVÁ Veronika SVOBODOVÁ VAŘEKOVÁ Radka KOČA Jaroslav BERKA Karel

  Conference abstract

  Year: 2018, type: Conference abstract

• Automated Annotation of Secondary Structure Elements for Entire Protein Families

  MIDLIK Adam HUTAŘOVÁ VAŘEKOVÁ Ivana HUTAŘ Jan MOTURU Tarakaramji NAVRÁTILOVÁ Veronika SVOBODOVÁ VAŘEKOVÁ Radka KOČA Jaroslav BERKA Karel

  Conference abstract

  Year: 2018, type: Conference abstract

• Family-wide annotation and schematic 2D visualization of secondary structure elements

  SVOBODOVÁ VAŘEKOVÁ Radka HUTAŘOVÁ VAŘEKOVÁ Ivana MIDLIK Adam HUTAŘ Jan MOTURU Tarakaramji NAVRÁTILOVÁ Veronika KOČA Jaroslav BERKA Karel

  Appeared in Conference without Proceedings

  Year: 2018, type: Appeared in Conference without Proceedings