doc. RNDr. Karel Berka, Ph.D.
Total number of publications: 33
2023
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ChannelsDB 2.0: A Comprehensive Database of Protein Tunnels and Pores in AlphaFold Era
Year: 2023, type: Conference abstract
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Mol* Volumes and Segmentations: visualization and interpretation of cell imaging data alongside macromolecular structure data and biological annotations
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New ways of protein family visualization in AlphaFold era
Year: 2023, type: Appeared in Conference without Proceedings
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αCharges: partial atomic charges for AlphaFold structures in high quality
2022
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OverProt: secondary structure consensus for protein families
Bioinformatics, year: 2022, volume: 38, edition: 14, DOI
2021
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2DProts: database of family-wide protein secondary structure diagrams
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Optimized SQE atomic charges for peptides accessible via a web application
Journal of Cheminformatics, year: 2021, volume: 13, edition: 1, DOI
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QM-like partial atomic charges for proteins available online
Year: 2021, type: Conference abstract
2020
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Atomic Charge Calculator II: web-based tool for the calculation of partial atomic charges
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SQE charge calculation and its applicability for proteins
Year: 2020, type: Conference abstract