CAVER Analyst 1.0: Graphic tool for interactive visualization and analysis of tunnels and channels in protein structures

• Authors: KOZLÍKOVÁ Barbora; ŠEBESTOVÁ Eva; ŠUSTR Vilém; BREZOVSKÝ Jan; STRNAD Ondřej; DANIEL Lukáš; BEDNÁŘ David; PAVELKA Antonín; MANAK Martin; BEZDĚKA Martin; BENEŠ Petr; KOTRY Matúš; GORA Artur Wiktor; DAMBORSKÝ Jiří; SOCHOR Jiří
• Year of publication: 2014
• Type: Article in Periodical
• Magazine / Source: Bioinformatics
• MU Faculty or unit: Faculty of Informatics
• Doi: http://dx.doi.org/10.1093/bioinformatics/btu364
• Field: Informatics
• Keywords: protein; visualization; tunnel; cavity
• Description: The transport of ligands, ions or solvent molecules into proteins with buried binding sites or through the membrane is enabled by protein tunnels and channels. CAVER Analyst is a software tool for calculation, analysis and real-time visualization of access tunnels and channels in static and dynamic protein structures. It provides an intuitive graphic user interface for setting up the calculation and interactive exploration of identified tunnels/channels and their characteristics.

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