Publication details

Biochemical Space: A Framework for Formal Description and Annotation of Complex Biological Processes

Authors

TROJÁK Matej ŠAFRÁNEK David ŠALAGOVIČ Jakub ROMANOVSKÁ Františka HAJNAL Matej

Year of publication 2017
Type Appeared in Conference without Proceedings
MU Faculty or unit

Faculty of Informatics

Citation
Description Biochemical Space is a novel framework for practical description of complex biological processes. It is developed as a part of Comprehensive Modeling Platform - a web-based platform for modeling and analysis of biological processes. In the context of the platform, Biochemical Space binds complicated quantitative models with an easy-to-understand, yet formal and compact qualitative description. It allows us to specify formal and well-annotated reaction networks of chemical entities and elemental reactions onto which the mathematical models are projected. Biochemical Space is supported by Biochemical Space Language that combines state-of-the-art rule-based techniques with metadata formats developed in well-known annotation databases.
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