Publication details

A switch from alpha-helical to beta-strand conformation during co-translational protein folding

Authors

AGIRREZABALA Xabier SAMATOVA Ekaterina MACHER Meline LIUTKUTE Marija MAITI Manisankar GIL-CARTON David NOVÁČEK Jiří VALLE Mikel RODNINA Marina V

Year of publication 2022
Type Article in Periodical
Magazine / Source EMBO Journal
MU Faculty or unit

Central European Institute of Technology

Citation
Web https://www.embopress.org/doi/full/10.15252/embj.2021109175
Doi http://dx.doi.org/10.15252/embj.2021109175
Keywords cotranslational folding; nascent chain; ribosome
Description Cellular proteins begin to fold as they emerge from the ribosome. The folding landscape of nascent chains is not only shaped by their amino acid sequence but also by the interactions with the ribosome. Here, we combine biophysical methods with cryo-EM structure determination to show that folding of a ß-barrel protein begins with formation of a dynamic ?-helix inside the ribosome. As the growing peptide reaches the end of the tunnel, the N-terminal part of the nascent chain refolds to a ß-hairpin structure that remains dynamic until its release from the ribosome. Contacts with the ribosome and structure of the peptidyl transferase center depend on nascent chain conformation. These results indicate that proteins may start out as ?-helices inside the tunnel and switch into their native folds only as they emerge from the ribosome. Moreover, the correlation of nascent chain conformations with reorientation of key residues of the ribosomal peptidyl-transferase center suggest that protein folding could modulate ribosome activity.
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