Publication details

Sketchbook: logical model inference from Boolean network sketches

Authors

HUVAR Ondřej BENEŠ Nikola BRIM Luboš PASTVA Samuel ŠAFRÁNEK David

Year of publication 2026
Type Peer-reviewed scientific article
Magazine / Source BIOINFORMATICS ADVANCES
MU Faculty or unit

Faculty of Informatics

Citation
web https://doi.org/10.1093/bioadv/vbag014
Doi https://doi.org/10.1093/bioadv/vbag014
Keywords boolean network; temporal logic; model inference; automated reasoning
Attached files
Description Sketchbook is a tool for design and analysis of Boolean network sketches, a framework for partial specification of Boolean network models combining static and dynamic logical constraints. The tool combines an intuitive graphical interface with a high-performance inference engine able to efficiently compute the whole set of all admissible candidate models.Availability and implementation All software and data are freely available as a reproducible artefact at https://doi.org/10.5281/zenodo.15828328. The up-to-date version of the tool is accessible through https://github.com/sybila/biodivine-sketchbook.

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