Conformations of flanking bases in HIV-1 RNA DIS kissing complexes studied by Molecular Dynamics

• Authors: RÉBLOVÁ Kamila; FADRNÁ Eva; JOANNA Sarzynska; KULINSKI Tadeusz; KULHÁNEK Petr; ENNIFAR Eric; KOČA Jaroslav; SPONER Jiri
• Year of publication: 2007
• Type: Article in Periodical
• Magazine / Source: Biophysical Journal
• MU Faculty or unit: Faculty of Science
• Field: Biophysics
• Keywords: molecular dynamics simulations; kissing loop complexes; flanking bases; RNA
• Description: Flanking bases are important for formation and stability of kissing loop complexes. Extended MD study was carried out with aim to describe basic structural and dynamics properties of these bulge bases to better understand their roles.

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