CV

Curriculum vitae

Name, first names, scientific degrees
  • doc. RNDr. Kozlikova Barbora, Ph.D.
Department/Faculty/University
  • Department of Visual Computing, Faculty of Informatics, Masaryk University
Function, current position
  • Associate Professor
Education and academic qualifications
  • 12/2011 Doctorate in Computer Science, Masaryk University. Thesis topic: Visualization techniques for static and dynamic protein molecules and their channels.
  • 2004-2006 Diploma in Computer Science (M.Sc.), Masaryk University. Thesis topic: Interactive visualization of molecular models.
  • 2001-2004 Diploma in Computer Science (Bc.), Masaryk University. Thesis topic: Animation techniques.
Professional experience
  • since 09/2017, Associate professor at the Masaryk University.
  • 07/2012 - 08/2017, Assistant professor at the Masaryk University: Research, education, supervising bachelor and master students.
  • 01/2012 - 06/2012, Java programmer and analyst in Home Credit International: Design and development of enterprise applications.
Teaching activities
  • Visualization, Computer Graphics API, Computational Geometry Project, Laboratory of Human-Computer Interaction, Generative design programming.
Research activities
  • Research interest in molecular analysis and visualization, security visualization, visual analysis, computational geometry.
Internship and stays for the purpose of study or work
  • 2008-2009: five months research stay at the Hasso-Plattner Institut at the University of Potsdam
  • 2014-2015: six months research stay at the Institute of Computer Graphics and Algorithms, TU Wien
  • 2015, 201: four short-term research stays in the Visualization Group at the University of Bergen, Norway
  • 2017: one month research stay at the Institute of Computer Graphics and Algorithms, TU Wien
  • 2008/10/01 – 2009/03/31: University of Potsdam, Potsdam, DEU
Other academic activities, research projects, grants
  • Since 10/2016: member of the Academic Senate FI MU
    Ongoing projects:
  • Czech Science Foundation project Methods of Identication and Visualization of Tunnels for Flexible Ligands in Dynamic Proteins (GA17-07690S)
  • Ministry of the Interior of the Czech Republic project Complex analysis and Visualization of Heterogeneous Big Data (BV III/1-VS)
  • International DFG-GACR project Visual Analysis of Protein-Ligand Interactions (GC18-18647J)
Non-university activities
  • Short Papers Co-Chair at EuroVis 2017
  • Publicity Co-Chair at BioVis 2017
  • General Chair of EuroVis 2018
  • General Chair of VCBM 2019
  • Full Papers Co-Chair at VCBM 2019
  • VisNotes co-chair at PacificVis 2020
  • IPC member of IEEE SciVis, EuroVis, CGI, VCBM
Most significant professional accomplishments
  • 2016: Best paper award at BioVis 2016 conference
  • 2017: Honorable mention best paper award at IEEE VIS 2017 conference
  • 2018: Honorable mention best paper award at IEEE VIS 2018 conference
Major publications
  • SCHÄFER, Marco, Nicolas BRICH, Jan BYŠKA, Sérgio Manuel MARQUES, David BEDNÁŘ, Philipp THIEL, Barbora KOZLÍKOVÁ a Michael KRONE. InVADo: Interactive Visual Analysis of Molecular Docking Data. IEEE Transactions on Visualization and Computer Graphics. IEEE Computer Society, 2024, roč. 30, č. 4, s. 1984-1997. ISSN 1077-2626. Dostupné z: https://dx.doi.org/10.1109/TVCG.2023.3337642. URL info
  • ULBRICH, Pavol, Manuela WALDNER, Katarína FURMANOVÁ, Sérgio Manuel MARQUES, David BEDNÁŘ, Barbora KOZLÍKOVÁ a Jan BYŠKA. sMolBoxes: Dataflow Model for Molecular Dynamics Exploration. IEEE Transactions on Visualization and Computer Graphics. United States: IEEE Computer Society, 2023, roč. 29, č. 1, s. 581-590. ISSN 1077-2626. Dostupné z: https://dx.doi.org/10.1109/TVCG.2022.3209411. URL info
  • KUŤÁK, David, Matias Nicolás SELZER, Jan BYŠKA, María Luján GANUZA, Ivan BARIŠIĆ, Barbora KOZLÍKOVÁ a Haichao MIAO. Vivern – A Virtual Environment for Multiscale Visualization and Modeling of DNA Nanostructures. IEEE Transactions on Visualization and Computer Graphics. 2022, roč. 28, č. 12, s. 4825-4838. ISSN 1077-2626. Dostupné z: https://dx.doi.org/10.1109/TVCG.2021.3106328. URL info
  • KOUŘIL, David, Tobias ISENBERG, Barbora KOZLÍKOVÁ, Miriah MEYER, Eduard GROELLER a Ivan VIOLA. HyperLabels: Browsing of Dense and Hierarchical Molecular 3D Models. IEEE Transactions on Visualization and Computer Graphics. 2021, roč. 27, č. 8, s. 3493-3504. ISSN 1077-2626. Dostupné z: https://dx.doi.org/10.1109/TVCG.2020.2975583. URL info
  • ZÁKOPČANOVÁ, Kristína, Marko ŘEHÁČEK, Jozef BÁTRNA, Daniel PLAKINGER, Sergej STOPPEL a Barbora KOZLÍKOVÁ. Visilant: Visual Support for the Exploration and Analytical Process Tracking in Criminal Investigations. IEEE Transactions on Visualization and Computer Graphics. IEEE, 2021, roč. 27, č. 2, s. 881-890. ISSN 1077-2626. Dostupné z: https://dx.doi.org/10.1109/TVCG.2020.3030356. URL info
  • SABANDO, María Virginia, Pavol ULBRICH, Matías SELZER, Jan BYŠKA, Jan MIČAN, Ignacio PONZONI, Axel J. SOTO, María Luján GANUZA a Barbora KOZLÍKOVÁ. ChemVA: Interactive Visual Analysis of Chemical Compound Similarity in Virtual Screening. IEEE Transactions on Visualization and Computer Graphics. IEEE, 2021, roč. 27, č. 2, s. 891-901. ISSN 1077-2626. Dostupné z: https://dx.doi.org/10.1109/TVCG.2020.3030438. URL info
  • FURMANOVÁ, Katarína, Adam JURČÍK, Barbora KOZLÍKOVÁ, Helwig HAUSER a Jan BYŠKA. Multiscale Visual Drilldown for the Analysis of Large Ensembles of Multi-Body Protein Complexes. IEEE Transactions on Visualization and Computer Graphics. IEEE, 2020, roč. 26, č. 1, s. 843-852. ISSN 1077-2626. Dostupné z: https://dx.doi.org/10.1109/TVCG.2019.2934333. URL info
  • JURČÍK, Adam, David BEDNÁŘ, Jan BYŠKA, Sérgio Manuel MARQUES, Katarína FURMANOVÁ, Lukáš DANIEL, Piia Pauliina KOKKONEN, Jan BREZOVSKÝ, Ondřej STRNAD, Jan ŠTOURAČ, Antonín PAVELKA, Martin MANAK, Jiří DAMBORSKÝ a Barbora KOZLÍKOVÁ. CAVER Analyst 2.0: Analysis and Visualization of Channels and Tunnels in Protein Structures and Molecular Dynamics Trajectories. Bioinformatics. 2018, roč. 34, č. 20, s. 3586-3588. ISSN 1367-4803. Dostupné z: https://dx.doi.org/10.1093/bioinformatics/bty386. URL info

2024/03/22

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