doc. RNDr. Barbora Kozlíková, Ph.D.
Vice-dean for R&D and doctoral studies, Faculty of Informatics
Office: A412
Botanická 554/68a
602 00 Brno
Phone: | +420 549 49 4398 |
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E‑mail: | |
Web: | https://www.fi.muni.cz/~xkozlik/ |
social and academic networks: |
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Curriculum vitae
- Name, first names, scientific degrees
- Kozlikova Barbora, Ph.D.
- Department/Faculty/University
- Department of Visual Computing, Faculty of Informatics, Masaryk University
- Function, current position
- Associate Professor
- Education and academic qualifications
- 12/2011 Doctorate in Computer Science, Masaryk University. Thesis topic: Visualization techniques for static and dynamic protein molecules and their channels.
- 2004-2006 Diploma in Computer Science (M.Sc.), Masaryk University. Thesis topic: Interactive visualization of molecular models.
- 2001-2004 Diploma in Computer Science (Bc.), Masaryk University. Thesis topic: Animation techniques.
- Professional experience
- since 09/2017, Associate professor at the Masaryk University.
- 07/2012 - 08/2017, Assistant professor at the Masaryk University: Research, education, supervising bachelor and master students.
- 01/2012 - 06/2012, Java programmer and analyst in Home Credit International: Design and development of enterprise applications.
- Teaching activities
- Visualization, Computer Graphics API, Computational Geometry Project, Laboratory of Human-Computer Interaction, Generative design programming.
- Research activities
- Research interest in molecular analysis and visualization, security visualization, visual analysis, computational geometry.
- Internship and stays for the purpose of study or work
- 2008-2009: five months research stay at the Hasso-Plattner Institut at the University of Potsdam
- 2014-2015: six months research stay at the Institute of Computer Graphics and Algorithms, TU Wien
- 2015, 201: four short-term research stays in the Visualization Group at the University of Bergen, Norway
- 2017: one month research stay at the Institute of Computer Graphics and Algorithms, TU Wien
- 2008/10/01 – 2009/03/31: University of Potsdam, Potsdam, DEU
- Other academic activities, research projects, grants
- Since 10/2016: member of the Academic Senate FI MU
Ongoing projects: - Czech Science Foundation project Methods of Identication and Visualization of Tunnels for Flexible Ligands in Dynamic Proteins (GA17-07690S)
- Ministry of the Interior of the Czech Republic project Complex analysis and Visualization of Heterogeneous Big Data (BV III/1-VS)
- International DFG-GACR project Visual Analysis of Protein-Ligand Interactions (GC18-18647J)
- Since 10/2016: member of the Academic Senate FI MU
- Non-university activities
- Short Papers Co-Chair at EuroVis 2017
- Publicity Co-Chair at BioVis 2017
- General Chair of EuroVis 2018
- General Chair of VCBM 2019
- Full Papers Co-Chair at VCBM 2019
- VisNotes co-chair at PacificVis 2020
- IPC member of IEEE SciVis, EuroVis, CGI, VCBM
- Most significant professional accomplishments
- 2016: Best paper award at BioVis 2016 conference
- 2017: Honorable mention best paper award at IEEE VIS 2017 conference
- 2018: Honorable mention best paper award at IEEE VIS 2018 conference
- Major publications
- KOCINCOVÁ, Lucia, Miroslava JAREŠOVÁ, Jan BYŠKA, Julius PARULEK, Helwig HAUSER a Barbora KOZLÍKOVÁ. Comparative Visualization of Protein Secondary Structures. BMC Bioinformatics. BioMed Central, 2017, roč. 18, č. 23, s. 1-12. ISSN 1471-2105. doi:10.1186/s12859-016-1449-z. URL info
- FURMANOVÁ, Katarína, Miroslava JAREŠOVÁ, Jan BYŠKA, Adam JURČÍK, Julius PARULEK, Helwig HAUSER a Barbora KOZLÍKOVÁ. Interactive Exploration of Ligand Transportation through Protein Tunnels. BMC Bioinformatics. BioMed Central, 2017, roč. 18, č. 22, s. 1-16. ISSN 1471-2105. doi:10.1186/s12859-016-1448-0. URL info
- KOZLÍKOVÁ, Barbora, Michael KRONE, Martin FALK, Norbert LINDOW, Marc BAADEN, Daniel BAUM, Ivan VIOLA, Julius PARULEK a Hans-Christian HEGE. Visualization of Biomolecular Structures: State of the Art Revisited. Computer Graphics Forum. Wiley-Blackwell, 2017, roč. 36, č. 8, s. 178-204. ISSN 0167-7055. doi:10.1111/cgf.13072. URL info
- BYŠKA, Jan, Mathieu Le MUZIC, Eduard GRÖLLER, Ivan VIOLA a Barbora KOZLÍKOVÁ. AnimoAminoMiner: Exploration of Protein Tunnels and their Properties in Molecular Dynamics. IEEE Transactions on Visualization and Computer Graphics. IEEE, 2016, roč. 22, č. 1, s. 747-756. ISSN 1077-2626. doi:10.1109/TVCG.2015.2467434. info
- PAVELKA, Antonín, Eva ŠEBESTOVÁ, Barbora KOZLÍKOVÁ, Jan BREZOVSKÝ, Jiří SOCHOR a Jiří DAMBORSKÝ. CAVER: Algorithms for Analyzing Dynamics of Tunnels in Macromolecules. IEEE/ACM Transactions on Computational Biology and Bioinformatics. IEEE Computer Society, 2016, roč. 13, č. 3, s. 505 - 517. ISSN 1545-5963. doi:10.1109/TCBB.2015.2459680. URL info
- KRONE, Michael, Barbora KOZLÍKOVÁ, Norbert LINDOW, Marc BAADEN, Daniel BAUM, Julius PARULEK, Hans-Christian HEGE a Ivan VIOLA. Visual Analysis of Biomolecular Cavities: State of the Art. Computer Graphics Forum. The Eurographics Association and John Wiley & Sons Ltd., 2016, roč. 35, č. 3, s. 527-551. ISSN 0167-7055. doi:10.1111/cgf.12928. info
- BYŠKA, Jan, Adam JURČÍK, Eduard M. GRÖLLER, Ivan VIOLA a Barbora KOZLÍKOVÁ. MoleCollar and Tunnel Heat Map Visualizations for Conveying Spatio-Temporo-Chemical Properties Across and Along Protein Voids. Computer Graphics Forum. Wiley-Blackwell, 2015, roč. 34, č. 3, s. 1-10. ISSN 0167-7055. doi:10.1111/cgf.12612. info
- KOZLÍKOVÁ, Barbora, Eva ŠEBESTOVÁ, Vilém ŠUSTR, Jan BREZOVSKÝ, Ondřej STRNAD, Lukáš DANIEL, David BEDNÁŘ, Antonín PAVELKA, Martin MANAK, Martin BEZDĚKA, Petr BENEŠ, Matúš KOTRY, Artur Wiktor GORA, Jiří DAMBORSKÝ a Jiří SOCHOR. CAVER Analyst 1.0: Graphic tool for interactive visualization and analysis of tunnels and channels in protein structures. Bioinformatics. Oxford University Press, 2014, roč. 30, č. 18, s. 2684-2685. ISSN 1367-4803. doi:10.1093/bioinformatics/btu364. info
- CHOVANCOVÁ, Eva, Antonín PAVELKA, Petr BENEŠ, Ondřej STRNAD, Jan BREZOVSKÝ, Barbora KOZLÍKOVÁ, Artur Wiktor GORA, Vilém ŠUSTR, Martin KLVAŇA, Petr MEDEK, Lada BIEDERMANNOVÁ, Jiří SOCHOR a Jiří DAMBORSKÝ. CAVER 3.0: A Tool for the Analysis of Transport Pathways in Dynamic Protein Structures. PLoS Computational Biology. 2012, roč. 8, č. 10, s. "nestránkováno", 12 s. ISSN 1553-7358. doi:10.1371/journal.pcbi.1002708. URL info
2019/05/05