Bioinformatics Core Facility

Articles

• A New Immortalized Human Lacrimal Gland Cell Line

  GLEIXNER Sophie ZAHN Ingrid DIETRICH Jana SINGH Swati DROBNY Alice SCHNEIDER Yanni SCHWENDNER Raphael SOCHER Eileen BLAVET Nicolas BRAEUER Lars GOSTIAN Antoniu-Oreste BALK Matthias SCHULZE-TANZIL Gundula GUENTHER Claudia PAULSEN Friedrich ARNOLD Philipp

  Article in Periodical

  Advances in Fuel Cells, year: 2024, volume: 13, edition: 7, DOI

• A novel assessment of whole-mount Gleason grading in prostate cancer to identify candidates for radical prostatectomy: a machine learning-based multiomics

  NING Jing SPIELVOGEL Clemens P HABERL David TRACHTOVÁ Karolína STOIBER Stefan RASUL Sazan BYSTRÝ Vojtěch WASINGER Gabriel BALTZER Pascal GURNHOFER Elisabeth TIMELTHALER Gerald SCHLEDERER Michaela PAPP Laszlo SCHACHNER Helga HELBICH Thomas HARTENBACH Markus GRUBMUELLER Bernhard SHARIAT Shahrokh F HACKER Marcus HAUG Alexander KENNER Lukas

  Article in Periodical

  Theranostics, year: 2024, volume: 14, edition: 12, DOI

• Cell-autonomous IL6ST activation suppresses prostate cancer development via STAT3/ARF/p53-driven senescence and confers an immune-active tumor microenvironment

  STERNBERG Christina RAIGEL Martin LIMBERGER Tanja TRACHTOVÁ Karolína SCHLEDERER Michaela LINDNER Desiree KODAJOVA Petra YANG Jiaye ZIEGLER Roman KALLA Jessica STOIBER Stefan DEY Saptaswa ZWOLANEK Daniela NEUBAUER Heidi A OBERHUBER Monika REDMER Torben HEJRET Václav TICHÝ Boris TOMBERGER Martina HARBUSCH Nora S PENCIK Jan TANGERMANN Simone BYSTRÝ Vojtěch PERSSON Jenny L EGGER Gerda POSPÍŠILOVÁ Šárka EFERL Robert WOLF Peter STERNBERG Felix HOGLER Sandra LAGGER Sabine ROSE-JOHN Stefan KENNER Lukas

  Article in Periodical

  Molecular Cancer, year: 2024, volume: 23, edition: 1, DOI

• Cytokinins regulate spatially specific ethylene production to control root growth in Arabidopsis

  YAMOUNE Amel ŽĎÁRSKÁ Markéta DEPAEPE Thomas RUDOLFOVÁ Anna SKALÁK Jan BERENDZEN Kenneth Wayne MIRA-RODADO Virtudes FITZ Michael PEKÁROVÁ Blanka MALÁ Katrina Leslie TARR Paul ŠPAČKOVÁ Eliška TOMOVIČOVÁ Lucia PARIZKOVA Barbora CUYACOT Abigail KOVÁČOVÁ Ingrid DOLGIKH Vladislav ZEMLYANSKAYA Elena PERNISOVÁ Markéta NOVAK Ondrej MEYEROWITZ Elliot HARTER Klaus VAN DER STRAETEN Dominique HEJÁTKO Jan

  Article in Periodical

  Plant Communications, year: 2024, volume: 5, edition: 11, DOI

• Deep learning and direct sequencing of labeled RNA captures transcriptome dynamics

  MARTINEK Vlastimil MARTIN Jessica BELAIR Cedric PAYEA Matthew J MALLA Sulochan ALEXIOU Panagiotis MARAGKAKIS Manolis

  Article in Periodical

  NAR Genomics and Bioinformatics, year: 2024, volume: 6, edition: 3, DOI

• Full-length direct RNA sequencing uncovers stress granule-dependent RNA decay upon cellular stress

  DAR Showkat Ahmad MALLA Sulochan MARTINEK Vlastimil PAYEA Matthew John LEE Christopher Tai-Yi MARTIN Jessica KHANDESHI Aditya Jignesh MARTINDALE Jennifer L BELAIR Cedric MARAGKAKIS Manolis

  Article in Periodical

  eLife, year: 2024, volume: 13, edition: December, DOI

• Heterosis versus breakdown in cyprinid hybrids associated with SVCV infection revealed by transcriptome profile analysis of head kidney

  VETEŠNÍKOVÁ ŠIMKOVÁ Andrea KŘÍŽOVÁ Kristína VOŘÍŠKOVÁ Kristýna VETEŠNÍK Lukáš HEJRET Václav GETTOVÁ Lenka VOREL Jiří RESLOVÁ Nikol BYSTRÝ Vojtěch

  Article in Periodical

  Aquaculture, year: 2024, volume: 578, edition: January, DOI

• Hormone-regulated expansins: Expression, localization, and cell wall biomechanics in Arabidopsis root growth

  ŠÁMALOVÁ Markéta MELNIKAVA Alesia ELSAYAD Kareem PEAUCELLE Alexis GAHUROVÁ Evelína GUMULEC Jaromír SPYROGLOU Ioannis ZEMLYANSKAYA Elena V UBOGOEVA Elena V BALKOVÁ Darina DEMKO Martin BLAVET Nicolas ALEXIOU Panagiotis BENES Vladimir MOUILLE Gregory HEJÁTKO Jan

  Article in Periodical

  Plant Physiology, year: 2024, volume: 194, edition: 1, DOI

• JUN mediates the senescence associated secretory phenotype and immune cell recruitment to prevent prostate cancer progression

  REDMER Torben RAIGEL Martin STERNBERG Christina ZIEGLER Roman PROBST Clara LINDNER Desiree AUFINGER Astrid LIMBERGER Tanja TRACHTOVÁ Karolína KODAJOVA Petra HOEGLER Sandra SCHLEDERER Michaela STOIBER Stefan OBERHUBER Monika BOLIS Marco NEUBAUER Heidi A MIRANDA Sara TOMBERGER Martina HARBUSCH Nora S INES Garces de los Fayos Alonso STERNBERG Felix MORIGGL Richard THEURILLAT Jean-Philippe TICHÝ Boris BYSTRÝ Vojtěch PERSSON Jenny L MATHAS Stephan ABERGER Fritz STROBL Birgit POSPÍŠILOVÁ Šárka MERKEL Olaf EGGER Gerda LAGGER Sabine KENNER Lukas

  Article in Periodical

  Molecular Cancer, year: 2024, volume: 23, edition: 1, DOI

• Knot or not? Identifying unknotted proteins in knotted families with sequence-based Machine Learning model

  SIKORA Maciej KLIMENTOVÁ Eva UCHAL Dawid ŠRÁMKOVÁ Denisa PERLINSKA Agata P NGUYEN Mai Lan KORPACZ Marta MALINOWSKA Roksana NOWAKOWSKI Szymon RUBACH Pawel ŠIMEČEK Petr SULKOWSKA Joanna I

  Article in Periodical

  Protein Science, year: 2024, volume: 33, edition: 7, DOI