prof. RNDr. Michal Kozubek, Ph.D.

2018

• Why rankings of biomedical image analysis competitions should be interpreted with care

  MAIER-HEIN Lena EISENMANN Matthias REINKE Annika ONOGUR Sinan STANKOVIC Marko SCHOLZ Patrick ARBEL Tal BOGUNOVIC Hrvoje BRADLEY Andrew CARASS Aaron FELDMANN Carolin FRANGI Alejandro FULL Peter VAN GINNEKEN Bram HANBURY Allan HONAUER Katrin KOZUBEK Michal LANDMAN Bennett MÄRZ Keno MAIER Oskar MAIER-HEIN Klaus MENZE Bjoern MÜLLER Henning NEHER Peter NIESSEN Wiro RAJPOOT Nasir SHARP Gregory SIRINUKUNWATTANA Korsuk SPEIDEL Stefanie STOCK Christian STOYANOV Danail TAHA Abdel Aziz VAN DER SOMMEN Fons WANG Ching-Wei WEBER Marc-André ZHENG Guoyan JANNIN Pierre KOPP-SCHNEIDER Annette

  Article in Periodical

  Nature Communications, year: 2018, volume: 9, edition: 5217, DOI

2017

• An objective comparison of cell-tracking algorithms

  ULMAN Vladimír MAŠKA Martin MAGNUSSON Klas E G RONNEBERGER Olaf HAUBOLD Carsten HARDER Nathalie MATULA Pavel MATULA Petr SVOBODA David RADOJEVIC Miroslav SMAL Ihor ROHR Karl JALDÉN Joakim BLAU Helen M DZYUBACHYK Oleh LELIEVELDT Boudewijn XIAO Pengdong LI Yuexiang CHO Siu-Yeung DUFOUR Alexandre C OLIVO-MARIN Jean-Christophe REYES-ALDASORO Constantino C SOLIS-LEMUS Jose A BENSCH Robert BROX Thomas STEGMAIER Johannes MIKUT Ralf WOLF Steffen HAMPRECHT Fred A ESTEVES Tiago QUELHAS Pedro DEMIREL Ömer MALMSTRÖM Lars JUG Florian TOMANCAK Pavel MEIJERING Erik MUNOZ-BARRUTIA Arrate KOZUBEK Michal ORTIZ-DE-SOLORZANO Carlos

  Article in Periodical

  Nature Methods, year: 2017, volume: 14, edition: 12, DOI

• Characterization of three-dimensional cancer cell migration in mixed collagen-Matrigel scaffolds using microfluidics and image analysis

  ANGUIANO María CASTILLA Carlos MAŠKA Martin EDERRA Cristina PELÁEZ Rafael MORALES Xabier MUNOZ-ARRIETA Gorka MUJIKA Maite KOZUBEK Michal MUNOZ-BARRUTIA Arrate ROUZAUT Ana ARANA Sergio GARCIA-AZNAR José Manuel ORTIZ-DE-SOLORZANO Carlos

  Article in Periodical

  PLoS ONE, year: 2017, volume: 12, edition: 2, DOI

• Image-based surrogate biomarkers for molecular subtypes of colorectal cancer

  POPOVICI Vlad BUDINSKÁ Eva DUŠEK Ladislav KOZUBEK Michal BOSMAN Fred

  Article in Periodical

  Bioinformatics, year: 2017, volume: 33, edition: 13, DOI

• Multimodal Simulations in Live Cell Imaging

  SVOBODA David KOZUBEK Michal

  Article in Proceedings

  Simulation and Synthesis in Medical Imaging, year: 2017

2016

• Challenges and Benchmarks in Bioimage Analysis

  KOZUBEK Michal

  Chapter of a book

  Focus on Bio-Image Informatics, year: 2016, number of pages: 32 s.

• Virtual cell imaging: A review on simulation methods employed in image cytometry

  ULMAN Vladimír SVOBODA David NYKTER Matti KOZUBEK Michal RUUSUVUORI Pekka

  Article in Periodical

  Cytometry Part A, year: 2016, volume: 89A, edition: 12, DOI

2015

• Cell tracking accuracy measurement based on comparison of acyclic oriented graphs

  MATULA Pavel MAŠKA Martin SOROKIN Dmitry MATULA Petr ORTIZ-DE-SOLÓRZANO Carlos KOZUBEK Michal

  Article in Periodical

  PLoS ONE, year: 2015, volume: 10, edition: 12, DOI

• Characterization of the Role of Collagen Network Structure and Composition in Cancer Cell Migration

  ANGUIANO María CASTILLA Carlos MAŠKA Martin EDERRA Cristina FERNÁNDEZ-MARQUÉS Javier PELÁEZ Rafael ROUZAUT Ana MUNOZ-BARRUTIA Arrate KOZUBEK Michal ORTIZ-DE-SOLÓRZANO Carlos

  Article in Proceedings

  37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, year: 2015

• Performance and Sensitivity Evaluation of 3-D Spot Detection Methods in Confocal Microscopy

  ŠTĚPKA Karel MATULA Pavel MATULA Petr WOERZ Stefan ROHR Karl KOZUBEK Michal

  Article in Periodical

  Cytometry Part A, year: 2015, volume: 87A, edition: 8, DOI