Mgr. Romana Gáborová

2024

• Dataset from a human-in-the-loop approach to identify functionally important protein residues from literature

  VOLLMAR Melanie TIRUNAGARI Santosh HARRUS Deborah ARMSTRONG David GÁBOROVÁ Romana GUPTA Deepti AFONSO Marcelo Querino Lima EVANS Genevieve VELANKAR Sameer

  Article in Periodical

  Scientific Data, year: 2024, volume: 11, edition: 1, DOI

2023

• Annotating Macromolecular Complexes in the Protein Data Bank: Improving the FAIRness of Structure Data

  APPASAMY Sri Devan BERRISFORD John GÁBOROVÁ Romana NAIR Sreenath ANYANGO Stephen GRUDININ Sergei DESHPANDE Mandar ARMSTRONG David PIDRUCHNA Ivanna ELLAWAY Joseph I. J. LEINES Grisell Díaz GUPTA Deepti HARRUS Deborah VARADI Mihaly VELANKAR Sameer

  Article in Periodical

  Scientific Data, year: 2023, volume: 10, edition: 1, DOI

• EMDB-the Electron Microscopy Data Bank

  TURNER Jack ABBOTT Sanja FONSECA Neli CARRIJO Lucas DURAISAMY Amudha Kumari SALIH Osman WANG Zhe KLEYWEGT Gerard J MORRIS Kyle L PATWARDHAN Ardan BURLEY Stephen K CRICHLOW Gregg FENG Zukang FLATT Justin W GHOSH Sutapa HUDSON Brian P LAWSON Catherine L LIANG Yuhe PEISACH Ezra PERSIKOVA Irina SEKHARAN Monica SHAO Chenghua YOUNG Jasmine VELANKAR Sameer ARMSTRONG David BAGE Marcus BUENO Wesley Morellato EVANS Genevieve GÁBOROVÁ Romana GANGULY Sudakshina GUPTA Deepti HARRUS Deborah TANWEER Ahsan BANSAL Manju RANGANNAN Vetriselvi KURISU Genji CHO Hasumi IKEGAWA Yasuyo KENGAKU Yumiko KIM Ju Yaen NIWA Satomi SATO Junko TAKUWA Ayako YU Jian HOCH Jeffrey C BASKARAN Kumaran XU Wenqing ZHANG Weizhe MA Xiaodan

  Article in Periodical

  Nucleic acids research, year: 2023, volume: 52, edition: Jan, DOI

2022

• PDBe and PDBe-KB: Providing high-quality, up-to-date and integrated resources of macromolecular structures to support basic and applied research and education

  VARADI Mihaly ANYANGO Stephen APPASAMY Sri Devan ARMSTRONG David BAGE Marcus BERRISFORD John CHOUDHARY Preeti BERTONI Damian DESHPANDE Mandar LEINES Grisell Diaz ELLAWAY Joseph EVANS Genevieve GÁBOROVÁ Romana GUPTA Deepti GUTMANAS Aleksandras HARRUS Deborah KLEYWEGT Gerard J BUENO Weslley Morellato NADZIRIN Nurul NAIR Sreenath PRAVDA Lukas AFONSO Marcelo Querino Lima SEHNAL David TANWEER Ahsan TOLCHARD James ABRAMS Charlotte DUNLOP Roisin VELANKAR Sameer

  Article in Periodical

  Protein Science, year: 2022, volume: 31, edition: 10, DOI

2020

• PDBe: improved findability of macromolecular structure data in the PDB

  ARMSTRONG David R. BERRISFORD John M. CONROY Matthew J. GUTMANAS Aleksandras ANYANGO Stephen CHOUDHARY Preeti CLARK Alice R. DANA Jose M. DESHPANDE Mandar DUNLOP Roisin GANE Paul GÁBOROVÁ Romana GUPTA Deepti HASLAM Pauline KOČA Jaroslav MAK Lora MIR Saqib MUKHOPADHYAY Abhik NADZIRIN Nurul NAIR Sreenath PAYSAN-LAFOSSE Typhaine PRAVDA Lukas SEHNAL David SALIH Osman SMART Oliver TOLCHARD James VARADI Mihaly SVOBODOVÁ Radka ZAKI Hossam KLEYWEGT Gerard J. VELANKAR Sameer

  Article in Periodical

  Nucleic acids research, year: 2020, volume: 48, edition: D1, DOI

2019

• Protein Data Bank: the single global archive for 3D macromolecular structure data

  BURLEY S.K. BERMAN H.M. BHIKADIYA C. BI C.X. CHEN L. DI COSTANZO L. CHRISTIE C. DUARTE J.M. DUTTA S. FENG Z.K. GHOSH S. GOODSELL D.S. GREEN R.K. GURANOVIC V. GUZENKO D. HUDSON B.P. LIANG Y.H. LOWE R. PEISACH E. PERISKOVA I. RANDLE C. ROSE A. SEKHARAN M. SHAO CH. TAO Y.P. VALASATAVA Y. VOIGT M. WESTBROOK J. YOUNG J. ZARDECKI C. ZHURAVLEVA M. KURISU G. NAKAMURA H. KENGAKU Y. CHO H. SATO J. KIM J.Y. IKEGAWA Y. NAKAGAWA A. YAMASHITA R. KUDOU T. BEKKER G.J. SUZUKI H. IWATA T. YOKOCHI M. KOBAYASHI N. FUJIWARA T. VELANKAR S. KLEYWEGT G.J. ANYANGO S. ARMSTRONG D.R. BERRISFORD J.M. CONROY M.J. DANA J.M. DESHPANDE M. GANE P. GÁBOROVÁ Romana GUPTA D. GUTMANAS A. KOČA Jaroslav MAK L. MIR S. MUKHOPADHYAY A. NADZIRIN N. NAIR S. PATWARDHAN A. PAYSAN-LAFOSSE T. PRAVDA Lukáš SALIH O. SEHNAL David VARADI M. SVOBODOVÁ VAŘEKOVÁ Radka MARKLEY J.L. HOCH J.C. ROMERO P.R. BASKARAN K. MAZIUK D. ULRICH E.L. WEDELL J.R. YAO H.Y. LIVNY M. IOANNIDIS Y.E.

  Article in Periodical

  Nucleic Acids Research, year: 2019, volume: 47, edition: D1, DOI