Ing. Jana Hozzová, Ph.D.

2022

• Improving ligand transport trajectory within flexible receptor in CaverDock

  NĚMCOVÁ Petra HOZZOVÁ Jana FILIPOVIČ Jiří

  Article in Proceedings

  SAC '22: Proceedings of the 37th ACM/SIGAPP Symposium on Applied Computing, year: 2022

• Property Map Collective Variable as a Useful Tool for a Force Field Correction

  TRAPL Dalibor KRUPIČKA MArtin VIŠŇOVSKÝ Vladimír HOZZOVÁ Jana OĽHA Jaroslav KŘENEK Aleš SPIWOK Vojtěch

  Article in Periodical

  Journal of Chemical Information and Modeling, year: 2022, volume: 62, edition: 3, DOI

• Using hardware performance counters to speed up autotuning convergence on GPUs

  FILIPOVIČ Jiří HOZZOVÁ Jana NEZARAT Amin OĽHA Jaroslav PETROVIČ Filip

  Article in Periodical

  Journal of Parallel and Distributed Computing, year: 2022, volume: 160, edition: February, DOI

2021

• 4D-GRAPHS

  BRÁZDIL Tomáš PORTEŠ David FILIPOVIČ Jiří HOZZOVÁ Jana EVANGELIDIS Thomas TRIPSIANES Konstantinos

  Year: 2021

• Complex simulation workflows in containerized high-performance environment

  VIŠŇOVSKÝ Vladimír SPIŠAKOVÁ Viktória HOZZOVÁ Jana OĽHA Jaroslav TRAPL Dalibor SPIWOK Vojtěch HEJTMÁNEK Lukáš KŘENEK Aleš

  Article in Proceedings

  Proc. ESM 2021, year: 2021

• Kernel Tuning Toolkit 2.0

  PETROVIČ Filip FILIPOVIČ Jiří STŘELÁK David HOZZOVÁ Jana TREMBECKÝ Richard

  Year: 2021

• Searching CUDA code autotuning spaces with hardware performance counters: data from benchmarks running on various GPU architectures

  HOZZOVÁ Jana FILIPOVIČ Jiří NEZARAT Amin OĽHA Jaroslav PETROVIČ Filip

  Article in Periodical

  Data in Brief, year: 2021, volume: 39, edition: December, DOI

• Simulation of Ligand Transport in Receptors Using CaverDock

  HOZZOVÁ Jana VÁVRA Ondřej BEDNÁŘ David FILIPOVIČ Jiří

  Chapter of a book

  Protein-Ligand Interactions and Drug Design, year: 2021, number of pages: 20 s.

2020

• A benchmark set of highly-efficient CUDA and OpenCL kernels and its dynamic autotuning with Kernel Tuning Toolkit

  PETROVIČ Filip STŘELÁK David HOZZOVÁ Jana OĽHA Jaroslav TREMBECKÝ Richard BENKNER Siegfried FILIPOVIČ Jiří

  Article in Periodical

  Future Generation Computer Systems, year: 2020, volume: 108, edition: July, DOI

• Exploiting historical data: Pruning autotuning spaces and estimating the number of tuning steps

  OĽHA Jaroslav HOZZOVÁ Jana FOUSEK Jan FILIPOVIČ Jiří

  Article in Periodical

  CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE, year: 2020, volume: 32, edition: 21, DOI