RNDr. Terézia Slanináková, Ph.D.

2026

• AlphaFind v2: similarity search in AlphaFold DB and TED domains across structural contexts

  SLANINÁKOVÁ Terézia ROŠINEC Adrián ČILLÍK Jakub KŘENEK Aleš GREŠOVÁ Katarína PORUBSKÁ Jana MARŠÁLKOVÁ Eva OĽHA Jaroslav PROCHÁZKA David HEJTMÁNEK Lukáš DOHNAL Vlastislav BERKA Karel SVOBODOVÁ Radka ANTOL Matej

  Peer-reviewed scientific article

  NUCLEIC ACIDS RESEARCH, year: 2026, DOI

• AlphaFind v2: Similarity Search in AlphaFold DB and TED Domains across Structural Contexts - data

  SLANINÁKOVÁ Terézia ROŠINEC Adrián ČILLÍK Jakub KŘENEK Aleš GREŠOVÁ Katarína PORUBSKÁ Jana MARŠÁLKOVÁ Eva OĽHA Jaroslav PROCHÁZKA David HEJTMÁNEK Lukáš DOHNAL Vlastislav BERKA Karel SVOBODOVÁ Radka ANTOL Matej

  Specialized public database

  Year: 2026, type: Specialized public database, DOI

• Foldify: Web Application for Protein Structure Prediction

  ĎURÁČIOVÁ Romana CAPANDOVÁ Michaela BERKA Karel SVOBODOVÁ Radka SLANINÁKOVÁ Terézia KOVÁČ Kristián ANTOL Matej HEJTMÁNEK Lukáš

  Peer-reviewed scientific article

  Journal of Chemical Information and Modeling, year: 2026, volume: 66, edition: 13, DOI

• GROMACS MetaDump: A tool to describe molecular dynamics simulations with powerful metadata

  SLANINÁKOVÁ Terézia ROŠINEC Adrián PAVLÍK Tomáš RANDIAK Róbert SVOBODA Tomáš RAČEK Tomáš BUČEKOVÁ Gabriela SCHINDLER Ondřej ANTOL Matej KŘENEK Aleš BERKA Karel SVOBODOVÁ Radka

  Conference abstract

  Year: 2026, type: Conference abstract

• GROMACS MetaDump: Automatic FAIR-Ready Metadata Extraction for Molecular Dynamics Simulations

  ROŠINEC Adrián ČILLÍK Jakub SLANINÁKOVÁ Terézia PAVLÍK Tomáš RANDIAK Róbert SVOBODA Tomáš RAČEK Tomáš BUČEKOVÁ Gabriela SCHINDLER Ondřej ANTOL Matej KŘENEK Aleš BERKA Karel SVOBODOVÁ Radka

  Appeared in Conference without Proceedings

  Year: 2026, type: Appeared in Conference without Proceedings

• MDFind: Federated search for molecular dynamics data

  ROŠINEC Adrián PAVLÍK Tomáš SLANINÁKOVÁ Terézia KŘENEK Aleš ANTOL Matej SVOBODOVÁ Radka

  Conference abstract

  Year: 2026, type: Conference abstract, DOI

• MolViewStories: Interactive molecular storytelling

  SLANINÁKOVÁ Terézia CHARLOP-POWERS Zachary DOSHCHENKO Viktoriia ROSE Alexander S. MIDLIK Adam SEKULA Anna FONSECA Neli MORRIS Kyle L. BURLEY Stephen K. VELANKAR Sameer FLEMING Jennifer VALLAT Brinda AUTIN Ludovic SEHNAL David

  Peer-reviewed scientific article

  PROTEIN SCIENCE, year: 2026, volume: 35, edition: 4, DOI

• On the Costs and Benefits of Learned Indexing for Dynamic High-Dimensional Data

  SLANINÁKOVÁ Terézia OĽHA Jaroslav PROCHÁZKA David ANTOL Matej DOHNAL Vlastislav

  Paper in proceedings

  Big Data Analytics and Knowledge Discovery 27th International Conference, DaWaK 2025, Bangkok, Thailand, August 25–27, 2025, Proceedings, year: 2026, DOI

2025

• AlphaFind 2.0 – Enhanced structural similarity search for AlphaFold database

  SLANINÁKOVÁ Terézia ČILLÍK Jakub ROŠINEC Adrián GREŠOVÁ Katarína KŘENEK Aleš PORUBSKÁ Jana SVOBODOVÁ Radka ANTOL Matej

  Appeared in Conference without Proceedings

  Year: 2025, type: Appeared in Conference without Proceedings

• GROMACS MetaDump

  ROŠINEC Adrián SLANINÁKOVÁ Terézia PAVLÍK Tomáš RANDIAK Róbert SVOBODA Tomáš RAČEK Tomáš BUČEKOVÁ Gabriela SCHINDLER Ondřej ANTOL Matej KŘENEK Aleš BERKA Karel SVOBODOVÁ Radka

  Software

  Year: 2025