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doc. RNDr. Martin Maška, Ph.D.

Associate professor, Department of Visual Computing

office: A312
Botanická 554/68a
602 00 Brno

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phone: +420 549 49 5774
e‑mail:
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Basic information
CV

Curriculum Vitae

Basic Personal Data
  • Martin Maška
    born on March 17, 1983 in Brno, Czech Republic
Workplace
  • Centre for Biomedical Image Analysis
    Department of Visual Computing
    Faculty of Informatics, Masaryk University
    Botanická 68a, 602 00 Brno, Czech Republic
Current Position
  • Associate Professor (6/2021 - present):
    - the co-principal investigator of a mid-term project "ERK Signaling Code of Epithelial Morphogenesis and Cancer", Grant Agency of Masaryk University, 4/2021–12/2023
    - a team member in a mid-term project "Segmentation and Tracking of Cells with Complex Shapes", Czech Science Foundation, 1/2021 - 12/2023
    - a team member of a mid-term project "National Research Infrastructure for Biological and Medical Imaging", Ministry of Education of the Czech Republic, 1/2020 - 12/2022
    - the co-principal investigator of a mid-term project "Deciphering the Mechanisms of Mammary Epithelial Branched Pattern Formation Through Iterative Biological and Mathematical Modelling", Grant Agency of Masaryk University, 3/2019–12/2021
Education and Academic Qualifications
  • 2021: Associate Professor, Informatics, Masaryk University, Thesis: "Object Tracking in Bioimage Data"
  • 2011: Ph.D., Informatics, Masaryk University, Thesis: "Fast Level Set-Like Algorithms in Fluorescence Microscopy"
  • 2009: RNDr., Informatics, Masaryk University, Thesis: "Fast Approximations of Implicit Active Contours in Fluorescence Microscopy"
  • 2006: M.S., Informatics, Masaryk University, Thesis: "Image Segmentation Using Fast Approximation of Implicit Active Surfaces" (in Czech)
Professional Experience
  • Scientific Researcher (7/2015 - 5/2021):
    - Centre for Biomedical Image Analysis, Faculty of Informatics, Masaryk University
    - a team member of a mid-term project "Benchmarking of Algorithms for Cell Segmentation and Tracking", Ministry of Education of the Czech Republic, 6/2017 - 4/2020
    - a team member of a mid-term project "Multi-modal Live Cell Image Segmentation and Tracking", Czech Science Foundation, 1/2017 - 12/2019
    - the principal investigator of a mid-term project "Development of Reliable Methods for Automated Quantitative Characterization of Cell Motility in Fluorescence Microscopy", Czech Science Foundation, 1/2016 - 12/2018
    - a team member of a long-term project "Dynamics and Organization of Chromosomes in the Cell Cycle and during Differentiation under Normal and Pathological Conditions", Czech Science Foundation, 1/2012 - 12/2018
  • Postdoctoral Research Fellow (1/2013 - 6/2015):
    - Centre for Biomedical Image Analysis, Faculty of Informatics, Masaryk University
    - a team member of a mid-term project "Employment of Newly Graduated Doctors of Science for Scientific Excellence", Ministry of Education of the Czech Republic, 7/2012 - 6/2015
  • Postdoctoral Research Fellow (7/2011 - 12/2012):
    - Cancer Imaging Laboratory, Center for Applied Medical Research, University of Navarra, Pamplona, Spain
    - a team member of a mid-term project "Characterization of Cellular Migratory Patterns Using 4D Imaging", Spanish Science and Innovation Ministry, 1/2010 - 12/2012
  • Research and Development worker (2/2011 - 6/2011):
    - Cancer Imaging Laboratory, Center for Applied Medical Research, University of Navarra, Pamplona, Spain
    - a team member of a mid-term project "Characterization of Cellular Migratory Patterns Using 4D Imaging", Spanish Science and Innovation Ministry, 1/2010 - 12/2012
  • Research and Development worker (7/2006 - 12/2010):
    - Centre for Biomedical Image Analysis, Faculty of Informatics, Masaryk University
    - a team member of a long-term project "Marker Determination, Screening and Early Diagnostics of Cancer Diseases Using Highly Automated Processing of Multidimensional Biomedical Images", Ministry of Education of the Czech Republic, 7/2006 - 6/2011
Pedagogical Activities
  • 2023-present: Digital Geometry
  • 2018-2022: Introduction to PhD Study
  • 2017-2021: Seminar on Foundations of Programming
  • 2016-present: Seminar on Mathematical Foundations of Computer Science
  • 2016-2017: Domain Specific Development in C/C++
  • 2014-present: Seminar on Introduction to Digital Image Processing
  • 2013-present: Seminar on Digital Image Processing
  • 2013-present: Image Processing Project
  • 2013-present: Seminar on Advanced Methods of Digital Image Processing
  • 2013-present: Advisor of master theses
  • 2011-present: Advisor of bachelor theses
  • 2007: Seminar on Design of Algorithms I
Scientific and Research Activities
Academical Stays
  • 2017: Center for Applied Medical Research, University of Navarra, Pamplona, Spain (1 month, short-term research stay)
  • 2014: Center for Applied Medical Research, University of Navarra, Pamplona, Spain (3 months, short-term research stay)
  • 2011-2012: Center for Applied Medical Research, University of Navarra, Pamplona, Spain (18 months, postdoctoral research stay)
  • 2010: Center for Applied Medical Research, University of Navarra, Pamplona, Spain (3 months, Erasmus)
  • 2009: Image Acquisition and Analysis in Microscopy, Academy of Sciences of the Czech Republic, Prague, Czech Republic (1 week)
  • 2008: 16th Summer School on Image Processing, Vienna University of Technology, Vienna, Austria (2 weeks)
  • 2008: Center for Applied Medical Research, University of Navarra, Pamplona, Spain (4 months, Erasmus)
  • 2007: Special Semester on Quantitative Biology analyzed by Mathematical Methods, Workshop on Bioimaging II / PDEs, Johann Radon Institute for Computational and Applied Mathematics, Linz, Austria (1 week)
Elected Membership in Scientific Societies and Editorial Boards
Scientific Awards
  • 2016: Masaryk University Rector’s Award for Outstanding Research Results Achieved by Young Scientists under 35
Selected Publications
  • HRADECKÁ, Lucia; David WIESNER; Jakub SUMBAL; Zuzana SUMBALOVÁ KOLEDOVÁ a Martin MAŠKA. Segmentation and Tracking of Mammary Epithelial Organoids in Brightfield Microscopy. IEEE Transactions on Medical Imaging. 2023, roč. 42, č. 1, s. 281-290. ISSN 0278-0062. Dostupné z: https://doi.org/10.1109/TMI.2022.3210714. URL info
  • MAŠKA, Martin; Vladimír ULMAN; Pablo DELGADO-RODRIGUEZ; Estibaliz GÓMEZ-DE-MARISCAL; Tereza NEČASOVÁ; Fidel A Guerrero PEÑA; Tsang Ing REN; Elliot M MEYEROWITZ; Tim SCHERR; Katharina LÖFFLER; Ralf MIKUT; Tianqi GUO; Yin WANG; Jan P ALLEBACH; Rina BAO; Noor M AL-SHAKARJI; Gani RAHMON; Imad Eddine TOUBAL; Kannappan PALANIAPPAN; Filip LUX; Petr MATULA; Ko SUGAWARA; Klas E G MAGNUSSON; Layton AHO; Andrew R COHEN; Assaf ARBELLE; Tal BEN-HAIM; Tammy Riklin RAVIV; Fabian ISENSEE; Paul F JÄGER; Klaus H MAIER-HEIN; Yanming ZHU; Cristina EDERRA; Ainhoa URBIOLA; Erik MEIJERING; Alexandre CUNHA; Arrate MUÑOZ-BARRUTIA; Michal KOZUBEK a Carlos ORTIZ-DE-SOLÓRZANO. The Cell Tracking Challenge: 10 years of objective benchmarking. Nature Methods. 2023, roč. 20, č. 7, s. 1010-1020. ISSN 1548-7091. Dostupné z: https://doi.org/10.1038/s41592-023-01879-y. URL info
  • RUBENS, Ulysse; Romain MORMONT; Lassi PAAVOLAINEN; Volker BÄCKER; Benjamin PAVIE; Leandro A. SCHOLZ; Gino MICHIELS; Martin MAŠKA; Devrim ÜNAY; Graeme BALL; Renaud HOYOUX; Rémy VANDAELE; Ofra GOLANI; Stefan G. STANCIU; Natasa SLADOJE; Perrine PAUL-GILLOTEAUX; Raphaël MARÉE a Sébastien TOSI. BIAFLOWS: A Collaborative Framework to Reproducibly Deploy and Benchmark Bioimage Analysis Workflows. Patterns. Cell Press, 2020, roč. 1, č. 3, s. 1-10. ISSN 2666-3899. Dostupné z: https://doi.org/10.1016/j.patter.2020.100040. URL info
  • CASTILLA, Carlos; Martin MAŠKA; Dmitry SOROKIN; Erik MEIJERING a Carlos ORTIZ-DE-SOLÓRZANO. 3-D Quantification of Filopodia in Motile Cancer Cells. IEEE Transactions on Medical Imaging. IEEE, 2019, roč. 38, č. 3, s. 862-872. ISSN 0278-0062. Dostupné z: https://doi.org/10.1109/TMI.2018.2873842. URL info
  • MAŠKA, Martin; Tereza NEČASOVÁ; David WIESNER; Dmitry SOROKIN; Igor PETERLÍK; Vladimír ULMAN a David SVOBODA. Toward Robust Fully 3D Filopodium Segmentation and Tracking in Time-Lapse Fluorescence Microscopy. Online. In 26th IEEE International Conference on Image Processing. Taipei: IEEE, 2019, s. 819-823. ISBN 978-1-5386-6249-6. Dostupné z: https://doi.org/10.1109/ICIP.2019.8803721. URL info
  • WIESNER, David; David SVOBODA; Martin MAŠKA a Michal KOZUBEK. CytoPacq: A web-interface for simulating multi-dimensional cell imaging. Bioinformatics. Oxford University Press, 2019, roč. 35, č. 21, s. 4531-4533. ISSN 1367-4803. Dostupné z: https://doi.org/10.1093/bioinformatics/btz417. URL info
  • KOTRBOVÁ, Anna; Karel ŠTĚPKA; Martin MAŠKA; Juraj PÁLENIK; Ladislav ILKOVICS; Dobromila KLEMOVÁ; Marek KRAVEC; František HUBATKA; Zankruti DAVE; Aleš HAMPL; Vítězslav BRYJA; Pavel MATULA a Vendula POSPÍCHALOVÁ. TEM ExosomeAnalyzer: a computer-assisted software tool for quantitative evaluation of extracellular vesicles in transmission electron microscopy images. Journal of Extracellular Vesicles. Taylor and Francis Ltd., 2019, roč. 8, č. 1, s. 1-13. ISSN 2001-3078. Dostupné z: https://doi.org/10.1080/20013078.2018.1560808. Full Text info
  • GÓMEZ-DE-MARISCAL, Estibaliz; Martin MAŠKA; Anna KOTRBOVÁ; Vendula POSPÍCHALOVÁ; Pavel MATULA a Arrate MUÑOZ-BARRUTIA. Deep-Learning-Based Segmentation of Small Extracellular Vesicles in Transmission Electron Microscopy Images. Scientific Reports. 2019, roč. 9, č. 13211, s. 1-10. ISSN 2045-2322. Dostupné z: https://doi.org/10.1038/s41598-019-49431-3. URL info
  • CASTILLA, Carlos; Martin MAŠKA; Dmitry SOROKIN; Erik MEIJERING a Carlos ORTIZ-DE-SOLORZANO. Segmentation of Actin-Stained 3D Fluorescent Cells with Filopodial Protrusions using Convolutional Neural Networks. Online. In 15th IEEE International Symposium on Biomedical Imaging. Washington: IEEE, 2018, s. 413-417. ISBN 978-1-5386-3636-7. Dostupné z: https://doi.org/10.1109/ISBI.2018.8363605. URL info
  • SOROKIN, Dmitry; Igor PETERLÍK; Vladimír ULMAN; David SVOBODA; Tereza NEČASOVÁ; Katsiarina MORGAENKO; Lívia EISELLEOVÁ; Lenka TESAŘOVÁ a Martin MAŠKA. FiloGen: A Model-Based Generator of Synthetic 3-D Time-Lapse Sequences of Single Motile Cells with Growing and Branching Filopodia. IEEE Transactions on Medical Imaging. IEEE, 2018, roč. 37, č. 12, s. 2630-2641. ISSN 0278-0062. Dostupné z: https://doi.org/10.1109/TMI.2018.2845884. URL info
  • PETERLÍK, Igor; David SVOBODA; Vladimír ULMAN; Dmitry SOROKIN a Martin MAŠKA. Model-Based Generation of Synthetic 3D Time-Lapse Sequences of Multiple Mutually Interacting Motile Cells with Filopodia. Online. In Simulation and Synthesis in Medical Imaging. Cham: Springer, 2018, s. 71-79. ISBN 978-3-030-00535-1. Dostupné z: https://doi.org/10.1007/978-3-030-00536-8_8. URL info
  • ANGUIANO, María; Carlos CASTILLA; Martin MAŠKA; Cristina EDERRA; Rafael PELÁEZ; Xabier MORALES; Gorka MUÑOZ-ARRIETA; Maite MUJIKA; Michal KOZUBEK; Arrate MUÑOZ-BARRUTIA; Ana ROUZAUT; Sergio ARANA; José Manuel GARCIA-AZNAR a Carlos ORTIZ-DE-SOLORZANO. Characterization of three-dimensional cancer cell migration in mixed collagen-Matrigel scaffolds using microfluidics and image analysis. PLoS ONE. 2017, roč. 12, č. 2, s. 1-24. ISSN 1932-6203. Dostupné z: https://doi.org/10.1371/journal.pone.0171417. URL info
  • SOROKIN, Dmitry; Igor PETERLÍK; Vladimír ULMAN; David SVOBODA a Martin MAŠKA. Model-Based Generation of Synthetic 3D Time-Lapse Sequences of Motile Cells with Growing Filopodia. Online. In 14th IEEE International Symposium on Biomedical Imaging. Melbourne: IEEE, 2017, s. 822-826. ISBN 978-1-5090-1172-8. Dostupné z: https://doi.org/10.1109/ISBI.2017.7950644. URL info
  • MAŠKA, Martin a Pavel MATULA. Particle Tracking Accuracy Measurement Based on Comparison of Linear Oriented Forests. Online. In 16th IEEE International Conference on Computer Vision Workshops. Venice: IEEE, 2017, s. 11-17. ISBN 978-1-5386-1034-3. Dostupné z: https://doi.org/10.1109/ICCVW.2017.8. URL info
  • ULMAN, Vladimír; Martin MAŠKA; Klas E G MAGNUSSON; Olaf RONNEBERGER; Carsten HAUBOLD; Nathalie HARDER; Pavel MATULA; Petr MATULA; David SVOBODA; Miroslav RADOJEVIC; Ihor SMAL; Karl ROHR; Joakim JALDÉN; Helen M BLAU; Oleh DZYUBACHYK; Boudewijn LELIEVELDT; Pengdong XIAO; Yuexiang LI; Siu-Yeung CHO; Alexandre C DUFOUR; Jean-Christophe OLIVO-MARIN; Constantino C REYES-ALDASORO; Jose A SOLIS-LEMUS; Robert BENSCH; Thomas BROX; Johannes STEGMAIER; Ralf MIKUT; Steffen WOLF; Fred A HAMPRECHT; Tiago ESTEVES; Pedro QUELHAS; Ömer DEMIREL; Lars MALMSTRÖM; Florian JUG; Pavel TOMANCAK; Erik MEIJERING; Arrate MUÑOZ-BARRUTIA; Michal KOZUBEK a Carlos ORTIZ-DE-SOLORZANO. An objective comparison of cell-tracking algorithms. Nature Methods. Macmillan Publishers Limited, part of Springer Nature, 2017, roč. 14, č. 12, s. 1141-1152. ISSN 1548-7091. Dostupné z: https://doi.org/10.1038/nmeth.4473. URL info
  • ŠTĚPKA, Karel; Martin MAŠKA; Jakub Jozef PÁLENIK; Vendula POSPÍCHALOVÁ; Anna KOTRBOVÁ; Ladislav ILKOVICS; Dobromila KLEMOVÁ; Aleš HAMPL; Vítězslav BRYJA a Pavel MATULA. Automatic Detection and Segmentation of Exosomes in Transmission Electron Microscopy. In Gang Hua, Hervé Jégou. Computer Vision -- ECCV 2016 Workshops: Amsterdam, The Netherlands, October 8-10 and 15-16, 2016, Proceedings, Part I. Cham, Switzerland: Springer International Publishing, 2016, s. 318-325. ISBN 978-3-319-46603-3. Dostupné z: https://doi.org/10.1007/978-3-319-46604-0_23. http://dx.doi.org/10.1007/978-3-319-46604-0_23 info
  • MATULA, Pavel; Martin MAŠKA; Dmitry SOROKIN; Petr MATULA; Carlos ORTIZ-DE-SOLÓRZANO a Michal KOZUBEK. Cell tracking accuracy measurement based on comparison of acyclic oriented graphs. PLoS ONE. 2015, roč. 10, č. 12, s. "e0144959", 19 s. ISSN 1932-6203. Dostupné z: https://doi.org/10.1371/journal.pone.0144959. URL info
  • MAŠKA, Martin; Cristina EDERRA; Javier FERNÁNDEZ-MARQUÉS; Arrate MUÑOZ-BARRUTIA; Michal KOZUBEK a Carlos ORTIZ-DE-SOLÓRZANO. Quantification of the 3D Collagen Network Geometry in Confocal Reflection Microscopy. Online. In 22nd IEEE International Conference on Image Processing. Québec City: IEEE, 2015, s. 1791-1794. ISBN 978-1-4799-8339-1. Dostupné z: https://doi.org/10.1109/ICIP.2015.7351109. URL info
  • ANGUIANO, María; Carlos CASTILLA; Martin MAŠKA; Cristina EDERRA; Javier FERNÁNDEZ-MARQUÉS; Rafael PELÁEZ; Ana ROUZAUT; Arrate MUÑOZ-BARRUTIA; Michal KOZUBEK a Carlos ORTIZ-DE-SOLÓRZANO. Characterization of the Role of Collagen Network Structure and Composition in Cancer Cell Migration. Online. In 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society. Milano: IEEE, 2015, s. 8139-8142. ISBN 978-1-4244-9271-8. Dostupné z: https://doi.org/10.1109/EMBC.2015.7320283. URL info
  • MAŠKA, Martin; Vladimír ULMAN; David SVOBODA; Pavel MATULA; Petr MATULA; Cristina EDERRA; Ainhoa URBIOLA; Tomás ESPAÑA; Subramanian VENKATESAN; Deepak M W BALAK; Pavel KARAS; Tereza BOLCKOVÁ; Markéta ŠTREITOVÁ; Craig CARTHEL; Stefano CORALUPPI; Nathalie HARDER; Karl ROHR; Klas E G MAGNUSSON; Joakim JALDÉN; Helen M BLAU; Oleh DZYUBACHYK; Pavel KŘÍŽEK; Guy M HAGEN; David PASTOR-ESCUREDO; Daniel JIMENEZ-CARRETERO; Maria J LEDESMA-CARBAYO; Arrate MUÑOZ-BARRUTIA; Erik MEIJERING; Michal KOZUBEK a Carlos ORTIZ-DE-SOLORZANO. A Benchmark for Comparison of Cell Tracking Algorithms. Bioinformatics. 2014, roč. 30, č. 11, s. 1609-1617. ISSN 1367-4803. Dostupné z: https://doi.org/10.1093/bioinformatics/btu080. URL info
  • CHENOUARD, Nicolas; Ihor SMAL; Fabrice DE CHAUMONT; Martin MAŠKA; Ivo F SBALZARINI; Yuanhao GONG; Janick CARDINALE; Craig CARTHEL; Stefano CORALUPPI; Mark WINTER; Andrew R COHEN; William J GODINEZ; Karl ROHR; Yannis KALAIDZIDIS; Liang LIANG; James DUNCAN; Hongying SHEN; Yingke XU; Klas E G MAGNUSSON; Joakim JALDÉN; Helen M BLAU; Perrine PAUL-GILLOTEAUX; Philippe ROUDOT; Charles KERVRANN; François WAHARTE; Jean-Yves TINEVEZ; Spencer L SHORTE; Joost WILLEMSE; Katherine CELLER; Gilles P VAN WEZEL; Han-Wei DAN; Yuh-Show TSAI; Carlos ORTIZ-DE-SOLÓRZANO; Jean-Christophe OLIVO-MARIN a Erik MEIJERING. Objective Comparison of Particle Tracking Methods. Nature Methods. 2014, roč. 11, č. 3, s. 281-289. ISSN 1548-7091. Dostupné z: https://doi.org/10.1038/nmeth.2808. URL info
  • SVOBODA, David; Vladimír ULMAN; Luděk MATYSKA; Martin MAŠKA; Ján BELLA a Stanislav STEJSKAL. On Proper Simulation of Phenomena Influencing Image Formation in Fluorescence Microscopy. In 2014 IEEE International Conference on Image Processing. Neuveden: IEEE Signal Processing Society, 2014, s. 3944-3948. ISBN 978-1-4799-5750-7. Dostupné z: https://doi.org/10.1109/ICIP.2014.7025801. URL info
  • MAŠKA, Martin; Ondřej DANĚK; Saray GARASA; Ana ROUZAUT; Arrate MUÑOZ-BARRUTIA a Carlos ORTIZ-DE-SOLÓRZANO. Segmentation and Shape Tracking of Whole Fluorescent Cells Based on the Chan-Vese Model. IEEE Transactions on Medical Imaging. 2013, roč. 32, č. 6, s. 995-1006. ISSN 0278-0062. Dostupné z: https://doi.org/10.1109/TMI.2013.2243463. URL info
  • MAŠKA, Martin; Xabier MORALES; Arrate MUÑOZ-BARRUTIA; Ana ROUZAUT a Carlos ORTIZ-DE-SOLÓRZANO. Automatic Quantification of Filopodia-Based Cell Migration. Online. In 10th IEEE International Symposium on Biomedical Imaging. San Francisco: IEEE, 2013, s. 668-671. ISBN 978-1-4673-6454-6. Dostupné z: https://doi.org/10.1109/ISBI.2013.6556563. URL info
  • DANĚK, Ondřej; Pavel MATULA; Martin MAŠKA a Michal KOZUBEK. Smooth Chan-Vese Segmentation via Graph Cuts. Pattern recognition letters : an official publication of the International Association for Pattern Recognition. Amsterdam: Elsevier, 2012, roč. 33, č. 10, s. 1405-1410. ISSN 0167-8655. Dostupné z: https://doi.org/10.1016/j.patrec.2012.03.013. URL info
  • MAŠKA, Martin; Arrate MUÑOZ-BARRUTIA a Carlos ORTIZ-DE-SOLÓRZANO. Fast Tracking of Fluorescent Cells Based on the Chan-Vese Model. Online. In 9th IEEE International Symposium on Biomedical Imaging. Barcelona: IEEE, 2012, s. 1316–1319. ISBN 978-1-4577-1857-1. URL info
  • DANĚK, Ondřej a Martin MAŠKA. A Simple Topology Preserving Max-Flow Algorithm for Graph Cut Based Image Segmentation. Online. In Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science (Selected Papers). Saarbrücken, Warden: Schloss Dagstuhl Publishing, 2011, s. 19-25. ISBN 978-3-939897-22-4. URL info
  • MAŠKA, Martin; Pavel MATULA a Michal KOZUBEK. Simultaneous Tracking of Multiple Objects Using Fast Level Set-Like Algorithm. Online. In Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science (Selected Papers). Saarbrücken, Wadern: Schloss Dagstuhl Publishing, 2011, s. 69-76. ISBN 978-3-939897-22-4. URL info
  • MAŠKA, Martin; Pavel MATULA; Ondřej DANĚK a Michal KOZUBEK. A Fast Level Set-Like Algorithm for Region-Based Active Contours. Online. In 6th International Symposium on Visual Computing. Berlin, Heidelberg: Springer-Verlag, 2010, s. 387-396. ISBN 978-3-642-17276-2. Dostupné z: https://doi.org/10.1007/978-3-642-17277-9_40. URL info
  • STEJSKAL, Stanislav; Irena KRONTORÁD KOUTNÁ; Pavel MATULA; Zdeněk RUČKA; Ondřej DANĚK; Martin MAŠKA a Michal KOZUBEK. The role of chromatin condensation during granulopoiesis in the regulation of gene cluster expression. Epigenetics. USA: Landes Bioscience, 2010, roč. 5, č. 8, s. 759-767. ISSN 1559-2294. Dostupné z: https://doi.org/10.4161/epi.5.8.13183. URL info
  • MAŠKA, Martin; Pavel MATULA a Michal KOZUBEK. Simultaneous Tracking of Multiple Objects Using Fast Level Set-Like Algorithm. In 6th Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. Brno: NOVPRESS, 2010, s. 117-125. ISBN 978-80-87342-10-7. info
  • DANĚK, Ondřej a Martin MAŠKA. A Simple Topology Preserving Max-Flow Algorithm for Graph Cut Based Image Segmentation. In 6th Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. Brno: NOVPRESS, 2010, s. 45-52. ISBN 978-80-87342-10-7. info
  • MAŠKA, Martin a Pavel MATULA. A Fast Level Set-Like Algorithm with Topology Preserving Constraint. Online. In 13th International Conference on Computer Analysis of Images and Patterns. Berlin, Heidelberg: Springer-Verlag, 2009, s. 930-938. ISBN 978-3-642-03766-5. Dostupné z: https://doi.org/10.1007/978-3-642-03767-2_113. URL info
  • DANĚK, Ondřej; Pavel MATULA; Carlos ORTIZ-DE-SOLÓRZANO; Arrate MUÑOZ-BARRUTIA; Martin MAŠKA a Michal KOZUBEK. Segmentation of Touching Cell Nuclei using a Two-Stage Graph Cut Model. In 16th Scandinavian Conference on Image Analysis. Berlin, Heidelberg: Springer-Verlag, 2009, s. 410-419. ISBN 978-3-642-02229-6. Dostupné z: https://doi.org/10.1007/978-3-642-02230-2_42. URL info
  • MAŠKA, Martin; Ondřej DANĚK; Carlos ORTIZ-DE-SOLÓRZANO; Arrate MUÑOZ-BARRUTIA; Michal KOZUBEK a Ignacio FERNÁNDEZ GARCÍA. A Two-Phase Segmentation of Cell Nuclei Using Fast Level Set-Like Algorithms. Online. In 16th Scandinavian Conference on Image Analysis. Berlin, Heidelberg: Springer-Verlag, 2009, s. 390-399. ISBN 978-3-642-02229-6. Dostupné z: https://doi.org/10.1007/978-3-642-02230-2_40. URL info
  • MATULA, Pavel; Martin MAŠKA; Ondřej DANĚK; Petr MATULA a Michal KOZUBEK. Acquiarium: Free Software for the Acquisition and Analysis of 3D Images of Cells in Fluorescence Microscopy. Online. In IEEE International Symposium on Biomedical Imaging. Boston: IEEE, 2009, s. 1138-1141. ISBN 978-1-4244-3932-4. URL info
  • SVOBODA, David; Marek KAŠÍK; Martin MAŠKA; Jan HUBENÝ; Stanislav STEJSKAL a Michal ZIMMERMANN. On Simulating 3D Fluorescent Microscope Images. In Computer Analysis of Images and Patterns. Berlin, Heidelberg: Springer-Verlag, 2007, s. 309-316. ISBN 978-3-540-74271-5. URL info
  • MAŠKA, Martin; Jan HUBENÝ; David SVOBODA a Michal KOZUBEK. A Comparison of Fast Level Set-Like Algorithms for Image Segmentation in Fluorescence Microscopy. Online. In 3rd International Symposium on Visual Computing. Berlin, Heidelberg: Spinger-Verlag, 2007, s. 571-581. ISBN 978-3-540-76855-5. URL info

2022/12/30

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