Project information
Project information
Úloha transposonů v dynamice rostlinných genomů
(TRANSPOSONY_DRG)
- Project Identification
- GA18-00258S
- Project Period
- 1/2018 - 12/2020
- Investor / Pogramme / Project type
-
Czech Science Foundation
- Standard Projects
- MU Faculty or unit
- Faculty of Informatics
- Cooperating Organization
-
Institute of Biophysics
- Responsible person doc. RNDr. Eduard Kejnovský, CSc.
Pomocí bioinformatiky i experimentálně budeme sledovat evoluční dynamiku transposonů, zajímavé strukturní rysy uvnitř transposonů, případný vliv těchto strukturních rysů na regulaci transposonů a také dopady transposonů na dynamiku genomů rostlin.
Publications
Total number of publications: 6
2023
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Analysis and classification of long terminal repeat sequences from plant LTR-retrotransposons
Workshop on Bioinformatics and Computational Biology (WBCB 2023), year: 2023
2020
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pqsfinder web: G-quadruplex prediction using optimized pqsfinder algorithm
Bioinformatics, year: 2020, volume: 36, edition: 8, DOI
-
TE-greedy-nester: structure-based detection of LTR retrotransposons and their nesting
Bioinformatics, year: 2020, volume: 36, edition: 20, DOI
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What Can Long Terminal Repeats Tell Us About the Age of LTR Retrotransposons, Gene Conversion and Ectopic Recombination?
Frontiers in Plant Science, year: 2020, volume: 11, edition: 644, DOI
2019
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Nested plant LTR retrotransposons target specific regions of other elements, while all LTR retrotransposons often target palindromes and nucleosome-occupied regions: in silico study
Mobile DNA, year: 2019, volume: 10, edition: 1, DOI
2018
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TE-nester: a recursive software tool for structure-based discovery of nested transposable elements
Proceedings 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), year: 2018