Publication details

BCSgen: Biochemical Space language software tool

Authors

TROJÁK Matej ŠAFRÁNEK David ŠALAGOVIČ Jakub

Year of publication 2017
MU Faculty or unit

Faculty of Informatics

Description BCSgen is a software providing basic functionality to write, maintain, and analyse models written in Biochemical Space Language (BCSL). The key features of the tool are: interactive editor which allows users to create and load models providing automatic syntax highlighting and errors reporting; transition system analysis allows to generate transition system for a given model and consequently analyse it (e.g. perform reachability analysis); simulation of a model with defined kinetic rates with either deterministic or stochastic approach; visualisation of simulated data in an interactive plot chart and visualisation of transition system in a web-based visualisation for exploration of whole space.
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