Publication details

MIFA: Metadata, Incentives, Formats and Accessibility guidelines to improve the reuse of AI datasets for bioimage analysis

Authors

ZULUETA-COARASA Teresa JUG Florian MATHUR Aastha MOORE Josh MUNOZ-BARRUTIA Arrate ANITA Liviu BABALOLA Kolawole BANKHEAD Peter GILLOTEAUX Perrine GOGOBERIDZE Nodar JONES Martin L. KLEYWEGT Gerard J. KORIR Paul KRESHUK Anna AYBUKE Kupcu Yoldas MARCONATO Luca NARAYAN Kedar NORLIN Nils OEZDEMIR Bugra RIESTERER Jessica L. RUSSELL Craig RZEPKA Norman SARKANS Ugis SERRANO-SOLANO Beatriz TISCHER Christian UHLMANN Virginie ULMAN Vladimír HARTLEY Matthew

Year of publication 2025
Type Peer-reviewed scientific article
Magazine / Source Nature Methods
MU Faculty or unit

Central European Institute of Technology

Citation
web https://www.nature.com/articles/s41592-025-02835-8.pdf?utm_source=clarivate&getft_integrator=clarivate
Doi https://doi.org/10.1038/s41592-025-02835-8
Keywords DEEP MICROSCOPY; SEGMENTATION; CELL; EMBRYOS
Description Artificial intelligence (AI) methods are powerful tools for biological image analysis and processing. High-quality annotated images are key to training and developing new algorithms, but access to such data is often hindered by the lack of standards for sharing datasets. We discuss the barriers to sharing annotated image datasets and suggest specific guidelines to improve the reuse of bioimages and annotations for AI applications. These include standards on data formats, metadata, data presentation and sharing, and incentives to generate new datasets. We are sure that the Metadata, Incentives, Formats and Accessibility (MIFA) recommendations will accelerate the development of AI tools for bioimage analysis by facilitating access to high-quality training and benchmarking data.
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