RNDr. Tomáš Raček, Ph.D.

2025

• GOLEM: A tool for visualizing the distribution of Gene regulatOry eLEMents within the plant promoters with a focus on male gametophyte

  NEVOSÁD Lukáš KLODOVÁ Božena RUDOLF Jiří RAČEK Tomáš PŘEROVSKÁ Tereza KUSOVÁ Alžbeta SVOBODOVÁ Radka HONYS David PROCHÁZKOVÁ SCHRUMPFOVÁ Petra

  Article in Periodical

  Plant Journal, year: 2025, volume: 121, edition: 5, DOI

• PDBCharges: Quantum-mechanical partial atomic charges for PDB structures

  BUČEKOVÁ Gabriela SCHINDLER Ondřej SVOBODA Tomáš ROŠINEC Adrián RAČEK Tomáš TICHÝ Dominik SVOBODOVÁ Radka

  Conference abstract

  Year: 2025, type: Conference abstract

2024

• Analysis and Visualization of Protein Channels, Tunnels, and Pores with MOLEonline and ChannelsDB 2.0

  ŠPAČKOVÁ Anna BAZGIER Václav RAČEK Tomáš SEHNAL David SVOBODOVÁ Radka BERKA Karel

  Chapter of a book

  Protein Bioinformatics, edition: Vyd. 1, year: 2024, number of pages: 15 s.

• Data Management of Biological Imaging Data

  SVOBODA Tomáš ROŠINEC Adrián RAČEK Tomáš SVOBODOVÁ Radka

  Appeared in Conference without Proceedings

  Year: 2024, type: Appeared in Conference without Proceedings

• ChannelsDB 2.0: a comprehensive database of protein tunnels and pores in AlphaFold era

  ŠPAČKOVÁ Anna VÁVRA Ondřej RAČEK Tomáš BAZGIER Václav SEHNAL David DAMBORSKÝ Jiří SVOBODOVÁ Radka BEDNÁŘ David BERKA Karel

  Article in Periodical

  Nucleic Acids Research, year: 2024, volume: 52, edition: D1, DOI

• Scientific Dataset Management System for the Research Institute Based on Onedata

  SVOBODA Tomáš ROŠINEC Adrián RAČEK Tomáš HANDL Josef KŘENEK Aleš SVOBODOVÁ Radka

  Conference abstract

  Year: 2024, type: Conference abstract

2023

• An Evaluation of EDAM Coverage in the Tools Ecosystem and Prototype Integration of Galaxy and Workflowhub Systems.

  LAMOTHE Lucie JENSEN Jennifer R B IENASESCU Hans GUSTAFSSON Ove J R GAIGNARD Alban REPCHEVSKY Dmitry SVOBODOVÁ Radka RAČEK Tomáš ROŠINEC Adrián ANTOL Matej MÉNAGER Hervé

  Article in Periodical (without peer review)

  Year: 2023, type: Article in Periodical (without peer review)

• Enhancing Data Accessibility: Strategies and Tools for Effective Metadata Management

  ROŠINEC Adrián SVOBODA Tomáš RAČEK Tomáš KŘENEK Aleš SVOBODOVÁ Radka

  Appeared in Conference without Proceedings

  Year: 2023, type: Appeared in Conference without Proceedings

• ChannelsDB 2.0: A Comprehensive Database of Protein Tunnels and Pores in AlphaFold Era

  ŠPAČKOVÁ Anna VÁVRA Ondřej RAČEK Tomáš BAZGIER Václav SEHNAL David DAMBORSKÝ Jiří SVOBODOVÁ Radka BERKA Karel

  Conference abstract

  Year: 2023, type: Conference abstract

• Management of life-science data and their metadata

  RAČEK Tomáš SVOBODA Tomáš SVOBODOVÁ Radka

  Appeared in Conference without Proceedings

  Year: 2023, type: Appeared in Conference without Proceedings