doc. RNDr. Martin Maška, Ph.D.

2019

• Toward Robust Fully 3D Filopodium Segmentation and Tracking in Time-Lapse Fluorescence Microscopy

  MAŠKA Martin NEČASOVÁ Tereza WIESNER David SOROKIN Dmitry PETERLÍK Igor ULMAN Vladimír SVOBODA David

  Article in Proceedings

  26th IEEE International Conference on Image Processing, year: 2019

2018

• FiloGen: A Model-Based Generator of Synthetic 3-D Time-Lapse Sequences of Single Motile Cells with Growing and Branching Filopodia

  SOROKIN Dmitry PETERLÍK Igor ULMAN Vladimír SVOBODA David NEČASOVÁ Tereza MORGAENKO Katsiarina EISELLEOVÁ Lívia TESAŘOVÁ Lenka MAŠKA Martin

  Article in Periodical

  IEEE Transactions on Medical Imaging, year: 2018, volume: 37, edition: 12, DOI

• Model-Based Generation of Synthetic 3D Time-Lapse Sequences of Multiple Mutually Interacting Motile Cells with Filopodia

  PETERLÍK Igor SVOBODA David ULMAN Vladimír SOROKIN Dmitry MAŠKA Martin

  Article in Proceedings

  Simulation and Synthesis in Medical Imaging, year: 2018

• Segmentation of Actin-Stained 3D Fluorescent Cells with Filopodial Protrusions using Convolutional Neural Networks

  CASTILLA Carlos MAŠKA Martin SOROKIN Dmitry MEIJERING Erik ORTIZ-DE-SOLORZANO Carlos

  Article in Proceedings

  15th IEEE International Symposium on Biomedical Imaging, year: 2018

2017

• An objective comparison of cell-tracking algorithms

  ULMAN Vladimír MAŠKA Martin MAGNUSSON Klas E G RONNEBERGER Olaf HAUBOLD Carsten HARDER Nathalie MATULA Pavel MATULA Petr SVOBODA David RADOJEVIC Miroslav SMAL Ihor ROHR Karl JALDÉN Joakim BLAU Helen M DZYUBACHYK Oleh LELIEVELDT Boudewijn XIAO Pengdong LI Yuexiang CHO Siu-Yeung DUFOUR Alexandre C OLIVO-MARIN Jean-Christophe REYES-ALDASORO Constantino C SOLIS-LEMUS Jose A BENSCH Robert BROX Thomas STEGMAIER Johannes MIKUT Ralf WOLF Steffen HAMPRECHT Fred A ESTEVES Tiago QUELHAS Pedro DEMIREL Ömer MALMSTRÖM Lars JUG Florian TOMANCAK Pavel MEIJERING Erik MUNOZ-BARRUTIA Arrate KOZUBEK Michal ORTIZ-DE-SOLORZANO Carlos

  Article in Periodical

  Nature Methods, year: 2017, volume: 14, edition: 12, DOI

• Characterization of three-dimensional cancer cell migration in mixed collagen-Matrigel scaffolds using microfluidics and image analysis

  ANGUIANO María CASTILLA Carlos MAŠKA Martin EDERRA Cristina PELÁEZ Rafael MORALES Xabier MUNOZ-ARRIETA Gorka MUJIKA Maite KOZUBEK Michal MUNOZ-BARRUTIA Arrate ROUZAUT Ana ARANA Sergio GARCIA-AZNAR José Manuel ORTIZ-DE-SOLORZANO Carlos

  Article in Periodical

  PLoS ONE, year: 2017, volume: 12, edition: 2, DOI

• Model-Based Generation of Synthetic 3D Time-Lapse Sequences of Motile Cells with Growing Filopodia

  SOROKIN Dmitry PETERLÍK Igor ULMAN Vladimír SVOBODA David MAŠKA Martin

  Article in Proceedings

  14th IEEE International Symposium on Biomedical Imaging, year: 2017

• Particle Tracking Accuracy Measurement Based on Comparison of Linear Oriented Forests

  MAŠKA Martin MATULA Pavel

  Article in Proceedings

  16th IEEE International Conference on Computer Vision Workshops, year: 2017

2016

• Automatic Detection and Segmentation of Exosomes in Transmission Electron Microscopy

  ŠTĚPKA Karel MAŠKA Martin PÁLENIK Jakub Jozef POSPÍCHALOVÁ Vendula KOTRBOVÁ Anna ILKOVICS Ladislav KLEMOVÁ Dobromila HAMPL Aleš BRYJA Vítězslav MATULA Pavel

  Article in Proceedings

  Computer Vision -- ECCV 2016 Workshops: Amsterdam, The Netherlands, October 8-10 and 15-16, 2016, Proceedings, Part I, year: 2016

2015

• Cell tracking accuracy measurement based on comparison of acyclic oriented graphs

  MATULA Pavel MAŠKA Martin SOROKIN Dmitry MATULA Petr ORTIZ-DE-SOLÓRZANO Carlos KOZUBEK Michal

  Article in Periodical

  PLoS ONE, year: 2015, volume: 10, edition: 12, DOI