Publication details

Predicting protein stability and solubility changes upon mutations: data perspective

Authors

MAZURENKO Stanislav

Year of publication 2020
Type Article in Periodical
Magazine / Source ChemCatChem
MU Faculty or unit

Faculty of Science

Citation
Web https://chemistry-europe.onlinelibrary.wiley.com/doi/10.1002/cctc.202000933
Doi http://dx.doi.org/10.1002/cctc.202000933
Keywords Database; Machine learning; Protein design; Protein engineering; Protein modifications
Attached files
Description Understanding mutational effects on protein stability and solubility is of particular importance for creating industrially relevant biocatalysts, resolving mechanisms of many human diseases, and producing efficient biopharmaceuticals, to name a few. Forin silicopredictions, the complexity of the underlying processes and increasing computational capabilities favor the use of machine learning. However, this approach requires sufficient training data of reasonable quality for making precise predictions. This minireview aims to summarize and scrutinize available mutational datasets commonly used for training predictors. We analyze their structure and discuss the possible directions of improvement in terms of data size, quality, and availability. We also present perspectives on the development of mutational data for accelerating the design of efficient predictors, introducing two new manually curated databases FireProt(DB)and SoluProtMut(DB)for protein stability and solubility, respectively.
Related projects:

You are running an old browser version. We recommend updating your browser to its latest version.

More info