Stanislav Mazurenko, PhD

2024

• Learning to design protein-protein interactions with enhanced generalization

  BUSHUIEV Anton BUSHUIEV Roman KOUBA Petr FILKIN Anatolii GABRIELOVA Marketa GABRIEL Michal SEDLAR Jiri PLUSKAL4 Tomas DAMBORSKÝ Jiří MAZURENKO Stanislav SIVIC Josef

  Article in Proceedings

  12th International Conference on Learning Representations 2024, year: 2024

• Making PBPK models more reproducible in practice

  DOMINGUEZ ROMERO Elena MAZURENKO Stanislav SCHERINGER Martin DOS SANTOS Martins Vitor A. P. EVELO Chris T. ANTON Mihail HANCOCK John M. ZUPANIC Anze SUAREZ-DIEZ Maria

  Article in Periodical

  Briefings in Bioinformatics, year: 2024, volume: 25, edition: 6, DOI

• PredictONCO: a web tool supporting decision-making in precision oncology by extending the bioinformatics predictions with advanced computing and machine learning

  ŠTOURAČ Jan BORKO Simeon KHAN Rayyan Tariq POKORNÁ Petra DOBIÁŠ Adam PLANAS IGLESIAS Joan MAZURENKO Stanislav RANGEL PAMPLONA PIZARRO PINTO José Gaspar SZOTKOWSKÁ Veronika ŠTĚRBA Jaroslav SLABÝ Ondřej DAMBORSKÝ Jiří BEDNÁŘ David

  Article in Periodical

  Briefings in Bioinformatics, year: 2024, volume: 25, edition: 1, DOI

• Protein representations: Encoding biological information for machine learning in biocatalysis

  HARDING-LARSEN David FUNK Jonathan MADSEN Niklas Gesmar GHARABLI Hani ACEVEDO-ROCHA Carlos G. MAZURENKO Stanislav WELNER Ditte Hededam

  Article in Periodical

  Biotechnology Advances, year: 2024, volume: 77, edition: December 2024, DOI

• Revealing data leakage in protein interaction benchmarks

  BUSHUIEV Anton BUSHUIEV Roman SEDLAR Jiri PLUSKAL Tomas DAMBORSKÝ Jiří MAZURENKO Stanislav SIVIC Josef

  Article in Proceedings

  ICLR 2024 Workshop on Generative and Experimental Perspectives for Biomolecular Design, year: 2024

• Special Issue on Artificial Intelligence for Synthetic Biology

  MARTIN Hector Garcia MAZURENKO Stanislav ZHAO Huimin

  Article in Periodical (without peer review)

  Year: 2024, type: Article in Periodical (without peer review)

• Successor Sequence Predictor (SSP)

  KHAN Rayyan Tariq KOHOUT Pavel MUSIL Miloš ROSÍNSKÁ Monika DAMBORSKÝ Jiří MAZURENKO Stanislav BEDNÁŘ David VILÍM Jan

  Software

  Year: 2024

2023

• In-depth analysis of biocatalysts by microfluidics: An emerging source of data for machine learning

  VAŠINA Michal KOVÁŘ David DAMBORSKÝ Jiří YUN Ding YANG Tianjin DE MELLO Andrew MAZURENKO Stanislav STAVRAKIS Stavros PROKOP Zbyněk

  Article in Periodical

  Biotechnology Advances, year: 2023, volume: 66, edition: September 2023, DOI

• Machine Learning-Guided Protein Engineering

  KOUBA Petr KOHOUT Pavel HADDADI Faraneh BUSHUIEV Anton SAMUSEVICH Raman SEDLAR Jiri DAMBORSKÝ Jiří PLUSKAL Tomáš SIVIC Josef MAZURENKO Stanislav

  Article in Periodical

  ACS Catalysis, year: 2023, volume: 13, edition: 21, DOI

2022

• Advanced database mining of efficient haloalkane dehalogenases by sequence and structure bioinformatics and microfluidics

  VAŠINA Michal VAŇÁČEK Pavel HON Jiri KOVÁŘ David FALDYNOVÁ Hana KUNKA Antonín BURYŠKA Tomáš BADENHORST Christoffel P. S. MAZURENKO Stanislav BEDNÁŘ David STAVRAKIS Stavros BORNSCHEUER Uwe T. DEMELLO Andrew DAMBORSKÝ Jiří PROKOP Zbyněk

  Article in Periodical

  Chem Catalysis, year: 2022, volume: 2, edition: 10, DOI