Mgr. Monika Čechová, Ph.D.

2024

• The complete sequence and comparative analysis of ape sex chromosomes

  MAKOVA Kateryna D PICKETT Brandon D HARRIS Robert S HARTLEY Gabrielle A ČECHOVÁ Monika PAL Karol NURK Sergey YOO Dongahn LI Qiuhui HEBBAR Prajna MCGRATH Barbara C ANTONACCI Francesca AUBEL Margaux BIDDANDA Arjun BORCHERS Matthew BORNBERG-BAUER Erich BOUFFARD Gerard G BROOKS Shelise Y CARBONE Lucia CARREL Laura CARROLL Andrew CHANG Pi-Chuan CHIN Chen-Shan COOK Daniel E CRAIG Sarah J C LUCIANA de Gennaro DIEKHANS Mark DUTRA Amalia GARCIA Gage H GRADY Patrick G S GREEN Richard E HADDAD Diana HALLAST Pille HARVEY William T HICKEY Glenn HILLIS David A HOYT Savannah J JEONG Hyeonsoo KAMALI Kaivan POND Sergei L Kosakovsky LAPOLICE Troy M LEE Charles LEWIS Alexandra P LOH Yong-Hwee E MASTERSON Patrick MCGARVEY Kelly M MCCOY Rajiv C MEDVEDEV Paul MIGA Karen H MUNSON Katherine M PAK Evgenia PATEN Benedict PINTO Brendan J POTAPOVA Tamara RHIE Arang ROCHA Joana L RYABOV Fedor RYDER Oliver A SACCO Samuel SHAFIN Kishwar SHEPELEV Valery A SLON Viviane SOLAR Steven J STORER Jessica M SUDMANT Peter H SWEETEN Alex TASSIA Michael G THIBAUD-NISSEN Francoise VENTURA Mario WILSON Melissa A YOUNG Alice C ZENG Huiqing ZHANG Xinru SZPIECH Zachary A HUBER Christian D GERTON Jennifer L YI Soojin V SCHATZ Michael C ALEXANDROV Ivan A KOREN Sergey O'NEILL Rachel J EICHLER Evan E PHILLIPPY Adam M

  Článek v odborném periodiku

  Nature, rok: 2024, ročník: 630, vydání: 8015, DOI

2023

• Accurate sequencing of DNA motifs able to form alternative (non-B) structures

  WEISSENSTEINER Matthias H CREMONA Marzia A GUIBLET Wilfried M STOLER Nicholas HARRIS Robert S ČECHOVÁ Monika ECKERT Kristin A CHIAROMONTE Francesca HUANG Yi-Fei MAKOVA Kateryna D

  Článek v odborném periodiku

  Genome research, rok: 2023, ročník: 33, vydání: 6, DOI

• The complete sequence of a human Y chromosome

  RHIE Arang NURK Sergey ČECHOVÁ Monika HOYT Savannah J TAYLOR Dylan J ALTEMOSE Nicolas HOOK Paul W KOREN Sergey RAUTIAINEN Mikko ALEXANDROV Ivan A ALLEN Jamie ASRI Mobin BZIKADZE Andrey V CHEN Nae-Chyun CHIN Chen-Shan DIEKHANS Mark FLICEK Paul FORMENTI Giulio FUNGTAMMASAN Arkarachai CARLOS Garcia Giron GARRISON Erik GERSHMAN Ariel GERTON Jennifer L GRADY Patrick G S GUARRACINO Andrea HAGGERTY Leanne HALABIAN Reza HANSEN Nancy F HARRIS Robert HARTLEY Gabrielle A HARVEY William T HAUKNESS Marina HEINZ Jakob HOURLIER Thibaut HUBLEY Robert M HUNT Sarah E HWANG Stephen JAIN Miten KESHARWANI Rupesh K LEWIS Alexandra P HENG Li LOGSDON Glennis A LUCAS Julian K MAKALOWSKI Wojciech MARKOVIC Christopher MARTIN Fergal J CARTNEY Ann M Mc MCCOY Rajiv C MCDANIEL Jennifer MCNULTY Brandy M MEDVEDEV Paul MIKHEENKO Alla MUNSON Katherine M MURPHY Terence D OLSEN Hugh E OLSON Nathan D PAULIN Luis F PORUBSKY David POTAPOVA Tamara RYABOV Fedor SALZBERG Steven L SAURIA Michael E G SEDLAZECK Fritz J SHAFIN Kishwar SHEPELEV Valery A SHUMATE Alaina STORER Jessica M SURAPANENI Likhitha OILL Angella M. Taravella THIBAUD-NISSEN Francoise TIMP Winston TOMASZKIEWICZ Marta VOLLGER Mitchell R WALENZ Brian P WATWOOD Allison C WEISSENSTEINER Matthias H WENGER Aaron M WILSON Melissa A ZARATE Samantha ZHU Yiming ZOOK Justin M EICHLER Evan E NEILL Rachel J SCHATZ Michael C MIGA Karen H MAKOVA Kateryna D PHILLIPPY Adam M

  Článek v odborném periodiku

  Nature, rok: 2023, ročník: 621, vydání: 7978, DOI

2022

• HiC-TE: a computational pipeline for Hi-C data analysis to study the role of repeat family interactions in the genome 3D organization

  LEXA Matej ČECHOVÁ Monika NGUYEN Son Hoang JEDLIČKA Pavel TOKAN Viktor KUBÁT Zdeněk HOBZA Roman KEJNOVSKÝ Eduard

  Článek v odborném periodiku

  BIOINFORMATICS, rok: 2022, ročník: 38, vydání: 16, DOI

• Satellite DNAs and human sex chromosome variation

  ČECHOVÁ Monika MIGA Karen H

  Článek v odborném periodiku

  SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY, rok: 2022, ročník: 128, vydání: 128, DOI

2020

• Dynamic evolution of great ape Y chromosomes

  ČECHOVÁ Monika VEGESNA Rahulsimham TOMASZKIEWICZ Marta HARRIS Robert S CHEN Di RANGAVITTAL Samarth MEDVEDEV Paul MAKOVA Kateryna D

  Článek v odborném periodiku

  Proceedings of the National Academy of Sciences of the United States of America, rok: 2020, ročník: 117, vydání: 42, DOI

• Probably Correct: Rescuing Repeats with Short and Long Reads

  ČECHOVÁ Monika

  Článek v odborném periodiku

  genes, rok: 2020

• Ten simple rules for biologists initiating a collaboration with computer scientists

  ČECHOVÁ Monika

  Článek v odborném periodiku

  Plos Computational Biology, rok: 2020

2019

• High Satellite Repeat Turnover in Great Apes Studied with Short- and Long-Read Technologies

  ČECHOVÁ Monika HARRIS Robert S TOMASZKIEWICZ Marta ARBEITHUBER Barbara CHIAROMONTE Francesca MAKOVA Kateryna D

  Článek v odborném periodiku

  Molecular Biology and Evolution, rok: 2019, ročník: 36, vydání: 11, DOI

2018

• Long-read sequencing technology indicates genome-wide effects of non-B DNA on polymerization speed and error rate

  GUIBLET Wilfried M CREMONA Marzia A ČECHOVÁ Monika HARRIS Robert S KEJNOVSKA Iva KEJNOVSKY Eduard ECKERT Kristin CHIAROMONTE Francesca MAKOVA Kateryna D

  Článek v odborném periodiku

  Genome research, rok: 2018, ročník: 28, vydání: 12, DOI