doc. RNDr. Petr Matula, Ph.D.

2025

• Bio-Volumentations

  HRADECKÁ Lucia LUX Filip ŠUĽAN Samuel MATULA Petr

  Software

  Rok: 2025

• Bio-Volumentations: A Python library for augmentation of volumetric image sequences

  HRADECKÁ Lucia LUX Filip ŠUĽAN Samuel MATULA Petr

  Článek v odborném periodiku

  SOFTWAREX, rok: 2025, ročník: 30, vydání: 102151, DOI

• High-throughput screening of E3 ubiquitin ligases identifies TRIM48 as a novel negative regulator of RIG-I signaling

  WU Guandi FRANKISH Jamie WILLEMSEN Joschka RICKEN Dominik BECKER Jonas SCHWEINOCH Darius WUEST Sandra BEIL Nina MATULA Petr ROHR Karl ERFLE Holger KADERALI Lars BINDER Marco

  Článek v odborném periodiku

  CELLULAR SIGNALLING, rok: 2025, ročník: 134, vydání: 1, DOI

• Shape-Aware Topology-preserving Means (SATM) method for shape fusion

  MELNIKOVA Aleksandra MATULA Petr

  Software

  Rok: 2025

• Study of Shape Fusion Algorithms for 3D Time-Lapse Microscopy

  MELNIKOVA Aleksandra MATULA Petr

  Článek ve sborníku

  Proceedings - International Symposium on Biomedical Imaging, rok: 2025

• Topology-preserving contourwise shape fusion

  MELNIKOVA Aleksandra MAŠKA Martin MATULA Petr

  Článek v odborném periodiku

  Nature Scientific Reports, rok: 2025, ročník: 15, vydání: 10713, DOI

• Towards fair decentralized benchmarking of healthcare AI algorithms with the Federated Tumor Segmentation (FeTS) challenge

  ZENK Maximilian BAID Ujjwal PATI Sarthak LINARDOS Akis EDWARDS Brandon SHELLER Micah FOLEY Patrick ARISTIZABAL Alejandro ZIMMERER David GRUZDEV Alexey MARTIN Jason SHINOHARA Russell T REINKE Annika ISENSEE Fabian PARAMPOTTUPADAM Santhosh PAREKH Kaushal FLOCA Ralf KASSEM Hasan BAHETI Bhakti THAKUR Siddhesh CHUNG Verena KUSHIBAR Kaisar LEKADIR Karim JIANG Meirui YIN Youtan YANG Hongzheng LIU Quande CHEN Cheng DOU Qi HENG Pheng-Ann ZHANG Xiaofan ZHANG Shaoting KHAN Muhammad Irfan AZEEM Mohammad Ayyaz JAFARITADI Mojtaba ALHONIEMI Esa KONTIO Elina KHAN Suleiman A MAECHLER Leon EZHOV Ivan KOFLER Florian SHIT Suprosanna PAETZOLD Johannes C LOEHR Timo WIESTLER Benedikt PEIRIS Himashi PAWAR Kamlesh ZHONG Shenjun CHEN Zhaolin HAYAT Munawar EGAN Gary HARANDI Mehrtash ECE Isik Polat POLAT Gorkem KOCYIGIT Altan TEMIZEL Alptekin TULADHAR Anup TYAGI Lakshay SOUZA Raissa FORKERT Nils D MOUCHES Pauline WILMS Matthias SHAMBHAT Vishruth MAURYA Akansh DANANNAVAR Shubham Subhas KALLA Rohit ANAND Vikas Kumar KRISHNAMURTHI Ganapathy NALAWADE Sahil GANESH Chandan WAGNER Ben REDDY Divya DAS Yudhajit YU Fang F FEI Baowei MADHURANTHAKAM Ananth J MALDJIAN Joseph SINGH Gaurav REN Jianxun ZHANG Wei AN Ning HU Qingyu ZHANG Youjia ZHOU Ying SIOMOS Vasilis TARRONI Giacomo PASSERRAT-PALMBACH Jonathan RAWAT Ambrish ZIZZO Giulio KADHE Swanand Ravindra EPPERLEIN Jonathan P BRAGHIN Stefano WANG Yuan KANAGAVELU Renuga WEI Qingsong YANG Yechao LIU Yong KOTOWSKI Krzysztof ADAMSKI Szymon MACHURA Bartosz MALARA Wojciech ZARUDZKI Lukasz NALEPA Jakub SHI Yaying GAO Hongjian AVESTIMEHR Salman YAN Yonghong AKBAR Agus S KONDRATEVA Ekaterina YANG Hua LI Zhaopei WU Hung-Yu ROTH Johannes SAUERESSIG Camillo MILESI Alexandre NGUYEN Quoc D GRUENHAGEN Nathan J HUANG Tsung-Ming MA Jun SINGH Har Shwinder H PAN Nai-Yu ZHANG Dingwen ZEINELDIN Ramy A FUTREGA Michal YUAN Yading CONTE Gian Marco FENG Xue PHAM Quan D XIA Yong JIANG Zhifan LUU Huan Minh DOBKO Mariia CARRE Alexandre TUCHINOV Bair MOHY-UD-DIN Hassan ALAM Saruar SINGH Anup SHAH Nameeta WANG Weichung SAKO Chiharu BILELLO Michel GHODASARA Satyam MOHAN Suyash DAVATZIKOS Christos CALABRESE Evan RUDIE Jeffrey VILLANUEVA-MEYER Javier CHA Soonmee HESS Christopher MONGAN John INGALHALIKAR Madhura JADHAV Manali PANDEY Umang SAINI Jitender HUANG Raymond Y CHANG Ken TO Minh-Son BHARDWAJ Sargam CHONG Chee AGZARIAN Marc KOZUBEK Michal LUX Filip MICHÁLEK Jan MATULA Petr KEŘKOVSKÝ Miloš KOPŘIVOVÁ Tereza DOSTÁL Marek VYBÍHAL Václav PINHO Marco C HOLCOMB James METZ Marie JAIN Rajan LEE Matthew D LUI Yvonne W TIWARI Pallavi VERMA Ruchika BAREJA Rohan YADAV Ipsa CHEN Jonathan KUMAR Neeraj GUSEV Yuriy BHUVANESHWAR Krithika SAYAH Anousheh BENCHEQROUN Camelia BELOUALI Anas MADHAVAN Subha COLEN Rivka R KOTROTSOU Aikaterini VOLLMUTH Philipp BRUGNARA Gianluca PREETHA Chandrakanth J SAHM Felix BENDSZUS Martin WICK Wolfgang MAHAJAN Abhishek BALANA Carmen CAPELLADES Jaume PUIG Josep CHOI Yoon Seong LEE Seung-Koo CHANG Jong Hee AHN Sung Soo SHAYKH Hassan F HERRERA-TRUJILLO Alejandro TRUJILLO Maria ESCOBAR William ABELLO Ana BERNAL Jose GOMEZ Jhon LAMONTAGNE Pamela MARCUS Daniel S MILCHENKO Mikhail NAZERI Arash LANDMAN Bennett RAMADASS Karthik XU Kaiwen CHOTAI Silky CHAMBLESS Lola B MISTRY Akshitkumar THOMPSON Reid C SRINIVASAN Ashok BAPURAJ J Rajiv RAO Arvind WANG Nicholas YOSHIAKI Ota MORITANI Toshio TURK Sevcan LEE Joonsang PRABHUDESAI Snehal GARRETT John LARSON Matthew JERAJ Robert LI Hongwei WEISS Tobias WELLER Michael BINK Andrea POUYMAYOU Bertrand SHARMA Sonam TSENG Tzu-Chi ADABI Saba ALEXANDRE Xavier Falcao MARTINS Samuel B TEIXEIRA Bernardo C A SPRENGER Flavia MENOTTI David LUCIO Diego R NICLOU Simone P KEUNEN Olivier HAU Ann-Christin PELAEZ Enrique FRANCO-MALDONADO Heydy LOAYZA Francis QUEVEDO Sebastian MCKINLEY Richard SLOTBOOM Johannes RADOJEWSKI Piotr MEIER Raphael WIEST Roland TRENKLER Johannes PICHLER Josef NECKER Georg HAUNSCHMIDT Andreas MECKEL Stephan GUEVARA Pamela TORCHE Esteban MENDOZA Cristobal FRANCO Vera RIOS Elvis LOPEZ Eduardo VELASTIN Sergio A CHOI Joseph BAEK Stephen KIM Yusung ISMAEL Heba ALLEN Bryan BUATTI John M ZAMPAKIS Peter PANAGIOTOPOULOS Vasileios TSIGANOS Panagiotis ALEXIOU Sotiris HALIASSOS Ilias ZACHARAKI Evangelia I MOUSTAKAS Konstantinos KALOGEROPOULOU Christina KARDAMAKIS Dimitrios M LUO Bing POISSON Laila M WEN Ning VALLIERES Martin LOUTFI Mahdi Ait Lhaj FORTIN David LEPAGE Martin MORON Fanny MANDEL Jacob SHUKLA Gaurav LIEM Spencer ALEXANDRE Gregory S LOMBARDO Joseph PALMER Joshua D FLANDERS Adam E DICKER Adam P OGBOLE Godwin OYEKUNLE Dotun ODAFE-OYIBOTHA Olubunmi OSOBU Babatunde SHU'AIBU Hikima Mustapha SONEYE Mayowa DAKO Farouk DORCAS Adeleye MURCIA Derrick FU Eric HAAS Rourke THOMPSON John A ORMOND David Ryan CURRIE Stuart FATANIA Kavi FROOD Russell SIMPSON Amber L PEOPLES Jacob J HU Ricky CUTLER Danielle MORAES Fabio Y TRAN Anh HAMGHALAM Mohammad BOSS Michael A GIMPEL James DEEPAK Kattil Veettil SCHMIDT Kendall CIMINO Lisa PRICE Cynthia BIALECKI Brian MARELLA Sailaja APGAR Charles JAKAB Andras WEBER Marc-Andre COLAK Errol KLEESIEK Jens FREYMANN John B KIRBY Justin S MAIER-HEIN Lena ALBRECHT Jake MATTSON Peter KARARGYRIS Alexandros SHAH Prashant MENZE Bjoern MAIER-HEIN Klaus BAKAS Spyridon

  Článek v odborném periodiku

  Nature communications, rok: 2025, ročník: 16, vydání: 1, DOI

2024

• Cell Tracking based on Integer Linear Programming and Probability Scores

  LUX Filip MATULA Petr

  Článek ve sborníku

  Athens, Greece, IEEE 21th International Symposium on Biomedical Imaging, rok: 2024

• MAPHIS-Measuring arthropod phenotypes using hierarchical image segmentations

  MRÁZ Radoslav ŠTĚPKA Karel PEKÁR Matěj MATULA Petr PEKÁR Stanislav

  Článek v odborném periodiku

  Methods in Ecology and Evolution, rok: 2024, ročník: 15, vydání: 1, DOI

2023

• MAPHIS - Measuring arthropod phenotypes using hierarchical image segmentations

  MRÁZ Radoslav ŠTĚPKA Karel PEKÁR Matěj MATULA Petr PEKÁR Stanislav

  Software

  Rok: 2023