RNDr. Jan Byška, Ph.D.

odborný asistent – Katedra vizuální informatiky


kancelář: A412
Botanická 554/68a
602 00 Brno

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telefon: 549 49 4398
e‑mail:
Životopis

Curriculum Vitae

Person-Related Identification Information
  • RNDr. Jan Byška, Ph.D.
Department
  • Department of Visual Computing, Faculty of Informatics, Masaryk University
Employment - Position
  • Assistant Professor
Education and Academic Qualifications
  • 2011 – 2016: Doctoral Studies – Informatics, Masaryk University, Brno, Czech Republic
  • 2006 – 2011: Bachelor & Master Studies – Applied Informatics & Computer Graphics
Employment
  • Nov. 2019 – now: Adjunct Associate Professor at University of Bergen, Bergen, Norway
  • Jul. 2018 – now: Assistant Professor at Masaryk University, Brno, Czech Republic
  • Oct. 2016 – Jun. 2019: Postdoctoral Fellowship at University of Bergen, Bergen, Norway
  • Apr. 2016 – Sep. 2016: Researcher at University of Bergen, Bergen, Norway
  • Nov. 2011 – Dec. 2012: Researcher at Masaryk University, Brno, Czech Republic
Teaching Activities
  • Computer Graphics, Visualization, Data-oriented Visual Computing
Scientific and Research Activities
  • Various challenges in the field of visualization of biomolecular and time-dependent data.
Internship
  • Oct. 2016 – Jun. 2019 PostDoc at University of Bergen, Bergen, Norway
  • Apr. 2016 – Sep. 2016 Researcher at University of Bergen, Bergen, Norway
  • Aug. 2015 - May. 2016 Intership at University of Bergen, Bergen, Norway
Activities Outside University
  • General co-chair: Workshop on Molecular Graphics and Visual Analysis of Molecular Data (2018, 2019, 2020, 2021)
  • Guest editor: Computers & Graphics (2021) Poster co-chair: EuroVis (2020, 2021), VCBM (2019), BioVis (2021)
  • Website co-chair: BioVis (2018, 2019, 2020) Tutorial co-organizer: Course in Science Communication (2018), NORBIS Summer School on Communicating Research by Visualization, Illustration, and Storytelling (2017)
  • Local co-organizer: VCBM (2016, 2019), EuroVis (2018) IPC: PacificVis (2020, 2021), VCBM (2020), IEEE VIS (2020), BIOKDD (2020), LEVIA (2020), ACM IUI (2021)
Awards Related to Science and Research
  • Best paper awards at BioVis 2016 and VCBM 2019.
Major Publications
  • FURMANOVÁ, Katarína, Adam JURČÍK, Barbora KOZLÍKOVÁ, Helwig HAUSER a Jan BYŠKA. Multiscale Visual Drilldown for the Analysis of Large Ensembles of Multi-Body Protein Complexes. IEEE Transactions on Visualization and Computer Graphics. IEEE, 2020, roč. 26, č. 1, s. 843-852. ISSN 1077-2626. doi:10.1109/TVCG.2019.2934333. URL info
  • BYŠKA, Jan, Adam JURČÍK, Katarína FURMANOVÁ, Barbora KOZLÍKOVÁ a Jan PALEČEK. Visual Analysis of Protein–Protein Interaction Docking Models Using COZOID Tool. In Stefan Canzar, Francisca Rojas Ringeling. Protein-Protein Interaction Networks. 1. vyd. New York, NY: Humana Press Inc, 2020. s. 81-94. Methods in Molecular Biology, vol. 2074. ISBN 978-1-4939-9872-2. doi:10.1007/978-1-4939-9873-9_7. URL info
  • FURMANOVÁ, Katarína, Ondřej VÁVRA, Barbora KOZLÍKOVÁ, Jiří DAMBORSKÝ, Vojtěch VONÁSEK, David BEDNÁŘ a Jan BYŠKA. DockVis: Visual Analysis of Molecular Docking Trajectories. Computer Graphics Forum. Wiley-Blackwell, 2020, roč. 39, č. 6, s. 452-464. ISSN 0167-7055. doi:10.1111/cgf.14048. URL info
  • BEDOUCHA, Pierre, Reuter NATHALIE, Helwig HAUSER a Jan BYŠKA. Visual exploration of large normal mode spaces to study protein flexibility. Computers & Graphics. Netherlands: Elsevier Science Direct, 2020, roč. 90, August, s. 73-83. ISSN 0097-8493. doi:10.1016/j.cag.2020.05.025. URL info
  • BYŠKA, Jan, Thomas TRAUTNER, Sérgio Manuel MARQUES, Jiří DAMBORSKÝ, Barbora KOZLÍKOVÁ a Manuela WALDNER. Analysis of Long Molecular Dynamics Simulations Using Interactive Focus+Context Visualization. Computer Graphics Forum. Wiley-Blackwell, 2019, roč. 38, č. 3, s. 441-453. ISSN 0167-7055. doi:10.1111/cgf.13701. URL info
  • JURČÍK, Adam, David BEDNÁŘ, Jan BYŠKA, Sérgio Manuel MARQUES, Katarína FURMANOVÁ, Lukáš DANIEL, Piia Pauliina KOKKONEN, Jan BREZOVSKÝ, Ondřej STRNAD, Jan ŠTOURAČ, Antonín PAVELKA, Martin MANAK, Jiří DAMBORSKÝ a Barbora KOZLÍKOVÁ. CAVER Analyst 2.0: Analysis and Visualization of Channels and Tunnels in Protein Structures and Molecular Dynamics Trajectories. Bioinformatics. 2018, roč. 34, č. 20, s. 3586-3588. ISSN 1367-4803. doi:10.1093/bioinformatics/bty386. info
  • KOCINCOVÁ, Lucia, Miroslava JAREŠOVÁ, Jan BYŠKA, Julius PARULEK, Helwig HAUSER a Barbora KOZLÍKOVÁ. Comparative Visualization of Protein Secondary Structures. BMC Bioinformatics. BioMed Central, 2017, roč. 18, č. 23, s. 0-0, 12 s. ISSN 1471-2105. doi:10.1186/s12859-016-1449-z. URL info
  • BYŠKA, Jan, Mathieu Le MUZIC, Eduard GRÖLLER, Ivan VIOLA a Barbora KOZLÍKOVÁ. AnimoAminoMiner: Exploration of Protein Tunnels and their Properties in Molecular Dynamics. IEEE Transactions on Visualization and Computer Graphics. IEEE, 2016, roč. 22, č. 1, s. 747-756. ISSN 1077-2626. doi:10.1109/TVCG.2015.2467434. info
  • BYŠKA, Jan, Adam JURČÍK, Eduard M. GRÖLLER, Ivan VIOLA a Barbora KOZLÍKOVÁ. MoleCollar and Tunnel Heat Map Visualizations for Conveying Spatio-Temporo-Chemical Properties Across and Along Protein Voids. Computer Graphics Forum. Wiley-Blackwell, 2015, roč. 34, č. 3, s. 1-10. ISSN 0167-7055. doi:10.1111/cgf.12612. info

2021/03/25

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