Dr. Ing. Jan Michálek

2025

• Smooth dynamic <i>T<sub>2</sub>*</i> mapping in fMRI based on a novel, total variation-minimizing algorithm for efficient multi-echo BOLD time series denoising with high signal-to-noise and contrast-to-noise ratios

  MICHÁLEK Jan MIKL Michal

  Článek v odborném periodiku

  FRONTIERS IN NEUROSCIENCE, rok: 2025, ročník: 19, DOI

• Towards fair decentralized benchmarking of healthcare AI algorithms with the Federated Tumor Segmentation (FeTS) challenge

  ZENK Maximilian BAID Ujjwal PATI Sarthak LINARDOS Akis EDWARDS Brandon SHELLER Micah FOLEY Patrick ARISTIZABAL Alejandro ZIMMERER David GRUZDEV Alexey MARTIN Jason SHINOHARA Russell T REINKE Annika ISENSEE Fabian PARAMPOTTUPADAM Santhosh PAREKH Kaushal FLOCA Ralf KASSEM Hasan BAHETI Bhakti THAKUR Siddhesh CHUNG Verena KUSHIBAR Kaisar LEKADIR Karim JIANG Meirui YIN Youtan YANG Hongzheng LIU Quande CHEN Cheng DOU Qi HENG Pheng-Ann ZHANG Xiaofan ZHANG Shaoting KHAN Muhammad Irfan AZEEM Mohammad Ayyaz JAFARITADI Mojtaba ALHONIEMI Esa KONTIO Elina KHAN Suleiman A MAECHLER Leon EZHOV Ivan KOFLER Florian SHIT Suprosanna PAETZOLD Johannes C LOEHR Timo WIESTLER Benedikt PEIRIS Himashi PAWAR Kamlesh ZHONG Shenjun CHEN Zhaolin HAYAT Munawar EGAN Gary HARANDI Mehrtash ECE Isik Polat POLAT Gorkem KOCYIGIT Altan TEMIZEL Alptekin TULADHAR Anup TYAGI Lakshay SOUZA Raissa FORKERT Nils D MOUCHES Pauline WILMS Matthias SHAMBHAT Vishruth MAURYA Akansh DANANNAVAR Shubham Subhas KALLA Rohit ANAND Vikas Kumar KRISHNAMURTHI Ganapathy NALAWADE Sahil GANESH Chandan WAGNER Ben REDDY Divya DAS Yudhajit YU Fang F FEI Baowei MADHURANTHAKAM Ananth J MALDJIAN Joseph SINGH Gaurav REN Jianxun ZHANG Wei AN Ning HU Qingyu ZHANG Youjia ZHOU Ying SIOMOS Vasilis TARRONI Giacomo PASSERRAT-PALMBACH Jonathan RAWAT Ambrish ZIZZO Giulio KADHE Swanand Ravindra EPPERLEIN Jonathan P BRAGHIN Stefano WANG Yuan KANAGAVELU Renuga WEI Qingsong YANG Yechao LIU Yong KOTOWSKI Krzysztof ADAMSKI Szymon MACHURA Bartosz MALARA Wojciech ZARUDZKI Lukasz NALEPA Jakub SHI Yaying GAO Hongjian AVESTIMEHR Salman YAN Yonghong AKBAR Agus S KONDRATEVA Ekaterina YANG Hua LI Zhaopei WU Hung-Yu ROTH Johannes SAUERESSIG Camillo MILESI Alexandre NGUYEN Quoc D GRUENHAGEN Nathan J HUANG Tsung-Ming MA Jun SINGH Har Shwinder H PAN Nai-Yu ZHANG Dingwen ZEINELDIN Ramy A FUTREGA Michal YUAN Yading CONTE Gian Marco FENG Xue PHAM Quan D XIA Yong JIANG Zhifan LUU Huan Minh DOBKO Mariia CARRE Alexandre TUCHINOV Bair MOHY-UD-DIN Hassan ALAM Saruar SINGH Anup SHAH Nameeta WANG Weichung SAKO Chiharu BILELLO Michel GHODASARA Satyam MOHAN Suyash DAVATZIKOS Christos CALABRESE Evan RUDIE Jeffrey VILLANUEVA-MEYER Javier CHA Soonmee HESS Christopher MONGAN John INGALHALIKAR Madhura JADHAV Manali PANDEY Umang SAINI Jitender HUANG Raymond Y CHANG Ken TO Minh-Son BHARDWAJ Sargam CHONG Chee AGZARIAN Marc KOZUBEK Michal LUX Filip MICHÁLEK Jan MATULA Petr KEŘKOVSKÝ Miloš KOPŘIVOVÁ Tereza DOSTÁL Marek VYBÍHAL Václav PINHO Marco C HOLCOMB James METZ Marie JAIN Rajan LEE Matthew D LUI Yvonne W TIWARI Pallavi VERMA Ruchika BAREJA Rohan YADAV Ipsa CHEN Jonathan KUMAR Neeraj GUSEV Yuriy BHUVANESHWAR Krithika SAYAH Anousheh BENCHEQROUN Camelia BELOUALI Anas MADHAVAN Subha COLEN Rivka R KOTROTSOU Aikaterini VOLLMUTH Philipp BRUGNARA Gianluca PREETHA Chandrakanth J SAHM Felix BENDSZUS Martin WICK Wolfgang MAHAJAN Abhishek BALANA Carmen CAPELLADES Jaume PUIG Josep CHOI Yoon Seong LEE Seung-Koo CHANG Jong Hee AHN Sung Soo SHAYKH Hassan F HERRERA-TRUJILLO Alejandro TRUJILLO Maria ESCOBAR William ABELLO Ana BERNAL Jose GOMEZ Jhon LAMONTAGNE Pamela MARCUS Daniel S MILCHENKO Mikhail NAZERI Arash LANDMAN Bennett RAMADASS Karthik XU Kaiwen CHOTAI Silky CHAMBLESS Lola B MISTRY Akshitkumar THOMPSON Reid C SRINIVASAN Ashok BAPURAJ J Rajiv RAO Arvind WANG Nicholas YOSHIAKI Ota MORITANI Toshio TURK Sevcan LEE Joonsang PRABHUDESAI Snehal GARRETT John LARSON Matthew JERAJ Robert LI Hongwei WEISS Tobias WELLER Michael BINK Andrea POUYMAYOU Bertrand SHARMA Sonam TSENG Tzu-Chi ADABI Saba ALEXANDRE Xavier Falcao MARTINS Samuel B TEIXEIRA Bernardo C A SPRENGER Flavia MENOTTI David LUCIO Diego R NICLOU Simone P KEUNEN Olivier HAU Ann-Christin PELAEZ Enrique FRANCO-MALDONADO Heydy LOAYZA Francis QUEVEDO Sebastian MCKINLEY Richard SLOTBOOM Johannes RADOJEWSKI Piotr MEIER Raphael WIEST Roland TRENKLER Johannes PICHLER Josef NECKER Georg HAUNSCHMIDT Andreas MECKEL Stephan GUEVARA Pamela TORCHE Esteban MENDOZA Cristobal FRANCO Vera RIOS Elvis LOPEZ Eduardo VELASTIN Sergio A CHOI Joseph BAEK Stephen KIM Yusung ISMAEL Heba ALLEN Bryan BUATTI John M ZAMPAKIS Peter PANAGIOTOPOULOS Vasileios TSIGANOS Panagiotis ALEXIOU Sotiris HALIASSOS Ilias ZACHARAKI Evangelia I MOUSTAKAS Konstantinos KALOGEROPOULOU Christina KARDAMAKIS Dimitrios M LUO Bing POISSON Laila M WEN Ning VALLIERES Martin LOUTFI Mahdi Ait Lhaj FORTIN David LEPAGE Martin MORON Fanny MANDEL Jacob SHUKLA Gaurav LIEM Spencer ALEXANDRE Gregory S LOMBARDO Joseph PALMER Joshua D FLANDERS Adam E DICKER Adam P OGBOLE Godwin OYEKUNLE Dotun ODAFE-OYIBOTHA Olubunmi OSOBU Babatunde SHU'AIBU Hikima Mustapha SONEYE Mayowa DAKO Farouk DORCAS Adeleye MURCIA Derrick FU Eric HAAS Rourke THOMPSON John A ORMOND David Ryan CURRIE Stuart FATANIA Kavi FROOD Russell SIMPSON Amber L PEOPLES Jacob J HU Ricky CUTLER Danielle MORAES Fabio Y TRAN Anh HAMGHALAM Mohammad BOSS Michael A GIMPEL James DEEPAK Kattil Veettil SCHMIDT Kendall CIMINO Lisa PRICE Cynthia BIALECKI Brian MARELLA Sailaja APGAR Charles JAKAB Andras WEBER Marc-Andre COLAK Errol KLEESIEK Jens FREYMANN John B KIRBY Justin S MAIER-HEIN Lena ALBRECHT Jake MATTSON Peter KARARGYRIS Alexandros SHAH Prashant MENZE Bjoern MAIER-HEIN Klaus BAKAS Spyridon

  Článek v odborném periodiku

  Nature communications, rok: 2025, ročník: 16, vydání: 1, DOI

2022

• Federated learning enables big data for rare cancer boundary detection

  PATI Sarthak BAID Ujjwal EDWARDS Brandon SHELLER Micah WANG Shih-Han REINA G Anthony FOLEY Patrick GRUZDEV Alexey KARKADA Deepthi DAVATZIKOS Christos SAKO Chiharu GHODASARA Satyam BILELLO Michel MOHAN Suyash VOLLMUTH Philipp BRUGNARA Gianluca PREETHA Chandrakanth J SAHM Felix MAIER-HEIN Klaus ZENK Maximilian BENDSZUS Martin WICK Wolfgang CALABRESE Evan RUDIE Jeffrey VILLANUEVA-MEYER Javier CHA Soonmee INGALHALIKAR Madhura JADHAV Manali PANDEY Umang SAINI Jitender GARRETT John LARSON Matthew JERAJ Robert CURRIE Stuart FROOD Russell FATANIA Kavi HUANG Raymond Y CHANG Ken QUINTERO Carmen Balana CAPELLADES Jaume PUIG Josep TRENKLER Johannes PICHLER Josef NECKER Georg HAUNSCHMIDT Andreas MECKEL Stephan SHUKLA Gaurav LIEM Spencer ALEXANDER Gregory S LOMBARDO Joseph PALMER Joshua D FLANDERS Adam E DICKER Adam P SAIR Haris I JONES Craig K VENKATARAMAN Archana JIANG Meirui SO Tiffany Y CHEN Cheng HENG Pheng Ann DOU Qi KOZUBEK Michal LUX Filip MICHÁLEK Jan MATULA Petr KEŘKOVSKÝ Miloš KOPŘIVOVÁ Tereza DOSTÁL Marek VYBÍHAL Václav VOGELBAUM Michael A MITCHELL J Ross FARINHAS Joaquim MALDJIAN Joseph A YOGANANDA Chandan Ganesh Bangalore PINHO Marco C REDDY Divya HOLCOMB James WAGNER Benjamin C ELLINGSON Benjamin M CLOUGHESY Timothy F RAYMOND Catalina OUGHOURLIAN Talia HAGIWARA Akifumi WANG Chencai TO Minh-Son BHARDWAJ Sargam CHONG Chee AGZARIAN Marc FALCAO Alexandre Xavier MARTINS Samuel B TEIXEIRA Bernardo C A SPRENGER Flávia MENOTTI David LUCIO Diego R LAMONTAGNE Pamela MARCUS Daniel WIESTLER Benedikt KOFLER Florian EZHOV Ivan METZ Marie JAIN Rajan LEE Matthew LUI Yvonne W MCKINLEY Richard SLOTBOOM Johannes RADOJEWSKI Piotr MEIER Raphael WIEST Roland MURCIA Derrick FU Eric HAAS Rourke THOMPSON John ORMOND David Ryan BADVE Chaitra SLOAN Andrew E VADMAL Vachan WAITE Kristin COLEN Rivka R PEI Linmin AK Murat SRINIVASAN Ashok BAPURAJ J Rajiv RAO Arvind WANG Nicholas YOSHIAKI Ota MORITANI Toshio TURK Sevcan LEE Joonsang PRABHUDESAI Snehal MORÓN Fanny MANDEL Jacob KAMNITSAS Konstantinos GLOCKER Ben DIXON Luke V M WILLIAMS Matthew ZAMPAKIS Peter PANAGIOTOPOULOS Vasileios TSIGANOS Panagiotis ALEXIOU Sotiris HALIASSOS Ilias ZACHARAKI Evangelia I MOUSTAKAS Konstantinos KALOGEROPOULOU Christina KARDAMAKIS Dimitrios M CHOI Yoon Seong LEE Seung-Koo CHANG Jong Hee AHN Sung Soo LUO Bing POISSON Laila WEN Ning TIWARI Pallavi VERMA Ruchika BAREJA Rohan YADAV Ipsa CHEN Jonathan KUMAR Neeraj SMITS Marion VAN DER VOORT Sebastian R ALAFANDI Ahmed INCEKARA Fatih WIJNENGA Maarten M J KAPSAS Georgios GAHRMANN Renske SCHOUTEN Joost W DUBBINK Hendrikus J VINCENT Arnaud J P E VAN DEN BENT Martin J FRENCH Pim J KLEIN Stefan YUAN Yading SHARMA Sonam TSENG Tzu-Chi ADABI Saba NICLOU Simone P KEUNEN Olivier HAU Ann-Christin VALLIERES Martin FORTIN David LEPAGE Martin LANDMAN Bennett RAMADASS Karthik XU Kaiwen CHOTAI Silky CHAMBLESS Lola B MISTRY Akshitkumar THOMPSON Reid C GUSEV Yuriy BHUVANESHWAR Krithika SAYAH Anousheh BENCHEQROUN Camelia BELOUALI Anas MADHAVAN Subha BOOTH Thomas C CHELLIAH Alysha MODAT Marc SHUAIB Haris DRAGOS Carmen ABAYAZEED Aly KOLODZIEJ Kenneth HILL Michael ABBASSY Ahmed GAMAL Shady MEKHAIMAR Mahmoud QAYATI Mohamed REYES Mauricio PARK Ji Eun YUN Jihye KIM Ho Sung MAHAJAN Abhishek MUZI Mark BENSON Sean BEETS-TAN Regina G H TEUWEN Jonas HERRERA-TRUJILLO Alejandro TRUJILLO Maria ESCOBAR William ABELLO Ana BERNAL Jose GÓMEZ Jhon CHOI Joseph BAEK Stephen KIM Yusung ISMAEL Heba ALLEN Bryan BUATTI John M KOTROTSOU Aikaterini LI Hongwei WEISS Tobias WELLER Michael BINK Andrea POUYMAYOU Bertrand SHAYKH Hassan F SALTZ Joel PRASANNA Prateek SHRESTHA Sampurna MANI Kartik M PAYNE David KURC Tahsin PELAEZ Enrique FRANCO-MALDONADO Heydy LOAYZA Francis QUEVEDO Sebastian GUEVARA Pamela TORCHE Esteban MENDOZA Cristobal FRANCO Vera RÍOS Elvis LÓPEZ Eduardo VELASTIN Sergio A OGBOLE Godwin SONEYE Mayowa OYEKUNLE Dotun ODAFE-OYIBOTHA Olubunmi OSOBU Babatunde SHU'AIBU Mustapha DORCAS Adeleye DAKO Farouk SIMPSON Amber L HAMGHALAM Mohammad PEOPLES Jacob J HU Ricky TRAN Anh CUTLER Danielle MORAES Fabio Y BOSS Michael A GIMPEL James VEETTIL Deepak Kattil SCHMIDT Kendall BIALECKI Brian MARELLA Sailaja PRICE Cynthia CIMINO Lisa APGAR Charles SHAH Prashant MENZE Bjoern BARNHOLTZ-SLOAN Jill S MARTIN Jason BAKAS Spyridon

  Článek v odborném periodiku

  Nature Communications, rok: 2022, ročník: 13, vydání: 7346, DOI

2021

• Multimodal Imaging of 3D Cell Aggregates

  PREISLER Jan MACHÁLKOVÁ Markéta ADAMOVÁ Barbora NAVRÁTILOVÁ Jarmila STIBOREK Marek MELIORISOVÁ Stanislava KROUPA Jiří HOUŠKA Pavel MICHÁLEK Jan ŠTĚPKA Karel RADASZKIEWICZ Katarzyna Anna PRUŠKA Adam KANICKÝ Viktor KOZUBEK Michal ŠMARDA Jan

  Vyžádané přednášky

  Rok: 2021, druh: Vyžádané přednášky

2020

• Lactic Acidosis Interferes With Toxicity of Perifosine to Colorectal Cancer Spheroids: Multimodal Imaging Analysis

  PAVLATOVSKÁ Barbora MACHÁLKOVÁ Markéta BRISUDOVÁ Petra PRUŠKA Adam ŠTĚPKA Karel MICHÁLEK Jan NEČASOVÁ Tereza BENEŠ Petr ŠMARDA Jan PREISLER Jan KOZUBEK Michal NAVRÁTILOVÁ Jarmila

  Článek v odborném periodiku

  Frontiers in Oncology, rok: 2020, ročník: 10, vydání: December, DOI

2019

• Combined therapy of perifosine and ABT-737 results in higher cytotoxic effect but also induces expression of EMT markers in colon cancer cell lines

  PAVLATOVSKÁ Barbora NAVRÁTILOVÁ Jarmila MACHÁLKOVÁ Markéta MICHÁLEK Jan ŠTĚPKA Karel PRUŠKA Adam KOZUBEK Michal BENEŠ Petr ŠMARDA Jan PREISLER Jan

  Konferenční abstrakty

  Rok: 2019, druh: Konferenční abstrakty

• Drug Penetration Analysis in 3D Cell Cultures Using Fiducial-Based Semiautomatic Coregistration of MALDI MSI and Immunofluorescence Images

  MACHÁLKOVÁ Markéta PAVLATOVSKÁ Barbora MICHÁLEK Jan PRUŠKA Adam ŠTĚPKA Karel NEČASOVÁ Tereza RADASZKIEWICZ Katarzyna Anna KOZUBEK Michal ŠMARDA Jan PREISLER Jan NAVRÁTILOVÁ Jarmila

  Článek v odborném periodiku

  Analytical Chemistry, rok: 2019, ročník: 91, vydání: 21, DOI

• Fast and accurate compensation of signal offset for T2 mapping

  MICHÁLEK Jan HANZLÍKOVÁ Pavla TRINH Tuan PACÍK Dalibor

  Článek v odborném periodiku

  Magnetic Resonance Materials in Physics, Biology and Medicine, rok: 2019, ročník: 32, vydání: 4, DOI

• Fiducial-based semi-automatic coregistration and analysis of multimodal MALDI MS and immunofluorescent data

  NAVRÁTILOVÁ Jarmila MACHÁLKOVÁ Markéta PAVLATOVSKÁ Barbora MICHÁLEK Jan PRUŠKA Adam ŠTĚPKA Karel RADASZKIEWICZ Katarzyna Anna PREISLER Jan ŠMARDA Jan KOZUBEK Michal

  Vyžádané přednášky

  Rok: 2019, druh: Vyžádané přednášky

• Quantitative Assessment of Anti-Cancer Drug Efficacy From Coregistered Mass Spectrometry and Fluorescence Microscopy Images of Multicellular Tumor Spheroids

  MICHÁLEK Jan ŠTĚPKA Karel KOZUBEK Michal NAVRÁTILOVÁ Jarmila PAVLATOVSKÁ Barbora MACHÁLKOVÁ Markéta PREISLER Jan PRUŠKA Adam

  Článek v odborném periodiku

  Microscopy and Microanalysis, rok: 2019, ročník: 25, vydání: 6, DOI